Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 116 5e-21 seq5 105 9e-18 >seq2 Length=3428829 Score = 116 bits (128), Expect = 5e-21 Identities = 177/251 (71%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| | | || | ||||| || || ||||| Sbjct 11617 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 11558 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||| ||||| ||||||||||| |||||||| || |||| || || || || || ||||| Sbjct 11557 TCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAA 11498 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-----ACTTGTATCATTA 39790 ||| || || || || ||||| || | || | ||| || | ||||| || | Sbjct 11497 GATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTG--TCGTCC 11440 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 |||||||| | ||||| || ||||||||||| | || || || || || || || Sbjct 11439 GTGATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCG 11380 Query 39851 TTAAAGAGATA 39861 | |||||| || Sbjct 11379 TCAAAGAGGTA 11369 Score = 98.7 bits (108), Expect = 1e-15 Identities = 353/547 (65%), Gaps = 4/547 (1%) Strand=Plus/Plus Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 || ||||| ||||| | || || | ||||| || || || || || || | | ||| Sbjct 3422668 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCC 3422727 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || ||||| || || ||||| || | ||||| || ||| | | ||| ||||| Sbjct 3422728 GGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATG 3422787 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 || | ||||| || || | || || || || | ||| ||| ||| | ||||| | | Sbjct 3422788 GGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACA 3422847 Query 69859 TTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAA 69917 || || || || || || ||||| | || ||||| | || || ||| || | Sbjct 3422848 TTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCA-CGTCTTGAG 3422906 Query 69918 TGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACAT 69977 || ||||| |||||||| || || || |||| | || || ||| ||||| Sbjct 3422907 GGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACAT 3422966 Query 69978 TTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTC 70037 ||| | | || || || || || | ||||| || ||||| ||||| || || Sbjct 3422967 TTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTC 3423026 Query 70038 AGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCG 70096 ||| | || ||||| || ||||| | || || | ||| | || || || | | Sbjct 3423027 AGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCG-TGGATACCGACAG 3423085 Query 70097 CGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGT 70156 |||||||||| | ||| ||||| || || || || ||||| || | | |||| Sbjct 3423086 CGACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAAGGAGGT 3423145 Query 70157 ATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAA 70216 | ||| || || || || |||||||| |||||||| | |||||| | | ||| || | Sbjct 3423146 AGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTAGATGA 3423205 Query 70217 TAACAGA 70223 | |||| Sbjct 3423206 TGGCAGA 3423212 >seq5 Length=1923346 Score = 105 bits (116), Expect = 9e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||||| || || | ||||| || ||||| | ||| ||||| |||||||| || Sbjct 661446 CCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTTC 661505 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || | ||| || ||||| || |||||||| ||||||||||||||||| || ||||| Sbjct 661506 TTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAAA 661565 Query 39758 GCAACAAG 39765 || ||||| Sbjct 661566 GCGACAAG 661573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908576754640