Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 6e-12 seq5 86.0 2e-11 >seq2 Length=3428829 Score = 87.8 bits (96), Expect = 6e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| ||||| || |||| ||||| | ||||| || | || || ||| | || Sbjct 11456 TTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCT-CGGGTTCATT 11514 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 ||||||||||||||| | || |||||||| || |||| ||| || ||||| ||||| Sbjct 11515 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGA 11574 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 || ||| ||| || |||||| | || |||||| ||||| || |||| Sbjct 11575 GCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCT 11624 Score = 84.2 bits (92), Expect = 7e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || |||| ||| |||| | |||| || | ||| || |||||||| || || || Sbjct 3422799 CGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAGGGCGG 3422740 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 |||||| || || ||||| |||||||||| ||||| |||||||||||||| Sbjct 3422739 TAACAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACAT 3422686 >seq5 Length=1923346 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/133 (76%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 443709 CGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCA 443767 || || ||||||||||| ||| |||||||| | || ||| ||| | |||| ||| ||| Sbjct 661576 CGCCTTGTCGCTTTTGC-GTGTGTCGAAGGCATCTTCTTTT-CGGGATCTTTCGCCGCCA 661519 Query 443768 TCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCA 443827 |||||||||| || || ||||| || |||| ||| |||| || ||||| || |||| Sbjct 661518 TCTTCTGGTTAAAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCA 661459 Query 443828 GTCGGGACGAGGG 443840 | || || ||||| Sbjct 661458 GCCGAGATGAGGG 661446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335470885570