Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 192 7e-44 seq5 89.7 6e-13 >seq2 Length=3428829 Score = 192 bits (212), Expect = 7e-44 Identities = 791/1237 (64%), Gaps = 39/1237 (3%) Strand=Plus/Plus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||| | || ||||| || || |||||| ||| |||||||| | || || || Sbjct 3421892 CCCAGAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGTACT 3421951 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | | | ||||| || || |||||| |||| || || || ||||| || | Sbjct 3421952 TACCCAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGA 3422011 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | || | ||| ||| | || || || |||| |||| || Sbjct 3422012 AGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCA--- 3422068 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 |||| | || || ||||| || ||||| | ||| | || | ||| ||||| || || Sbjct 3422069 --TAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGA 3422126 Query 111103 CTTTCGCGCAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || |||| ||| | | || || | || | ||||| ||| || || || Sbjct 3422127 GTTCTGCGC---CTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTT 3422183 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||| || | ||| |||||||| || || || | | | ||| | || |||| | Sbjct 3422184 GGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGTC 3422243 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| | || ||||||| || || | ||||||||||| ||| || | | Sbjct 3422244 GACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGA 3422303 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||| || ||||| | ||||| || ||||| || | | || |||||| Sbjct 3422304 GTACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTT 3422363 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| ||| ||| ||||||||||||||| |||| |||||||| || || | Sbjct 3422364 CGACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGC 3422423 Query 111400 TTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCT- 111455 | ||||| || ||| | | || | | || ||||| || | ||| | || Sbjct 3422424 CTCAAGAATGGCAAACCAGAGCTTCTGGGCCTT----AATGGTCTTTCGACCCTTGCCAG 3422479 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACC 111513 || ||||||| |||||| || |||| ||| | | | | |||| ||||| Sbjct 3422480 CCTTCTCGTACGACTCGTAGAGCTGCTCGAACTTCTC--CGAGTGGACATCGGCAAGACC 3422537 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | | || || | || | ||| | || | ||| |||||||||||||| Sbjct 3422538 GGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAA 3422597 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 111632 ||||| | ||||| |||| | ||||| || | | ||| || |||| || | ||| | Sbjct 3422598 GAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGA-CCTCCTCCTTACCGT 3422656 Query 111633 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 111692 |||| || | || |||||||| | ||| || |||||||| ||||| || |||| | Sbjct 3422657 GGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGG 3422716 Query 111693 CGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 111746 | | | ||| |||| || | || | || || ||||| ||||||| | Sbjct 3422717 CAAACGCGCCCG---GACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGA 3422773 Query 111747 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 111806 | | || ||||| || | ||||| | || | || || || || ||| |||| Sbjct 3422774 ACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATC 3422833 Query 111807 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 111866 ||||| | |||| |||||||| | || || || || || ||| ||||| |||| Sbjct 3422834 CCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCG 3422893 Query 111867 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 111926 | ||| | | || || |||||||||| | || ||||| ||||| | || | |||| Sbjct 3422894 CGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGA 3422953 Query 111927 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 111986 |||| ||||| || || | || ||||| || ||||||||||| || | ||||| Sbjct 3422954 AGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGG 3423013 Query 111987 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 |||| | | ||||| || ||| ||||| | ||| ||||||| | |||| Sbjct 3423014 TGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGT 3423073 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| |||| ||||| ||||| | ||||| ||| || Sbjct 3423074 GGATACCGACAGCGACACGCATAATCATGTGCTGGGG 3423110 Score = 111 bits (122), Expect = 2e-19 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| || || || || || || |||||| || || Sbjct 11614 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCC 11555 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | |||||| || ||||||||||| Sbjct 11554 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGAT 11495 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| || ||||| || | || || || ||||| | | ||||| | || Sbjct 11494 ACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTG---GACTTGTCGTCCGT 11438 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | ||| || | ||||| | || ||||||| || || || | || | ||||| || Sbjct 11437 GATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTC 11378 Query 122895 AAA 122897 ||| Sbjct 11377 AAA 11375 >seq5 Length=1923346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||||||| ||||| || || ||||| | || ||||| ||||| || ||| Sbjct 661446 CCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTTC 661505 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || ||||| | || ||| ||| || || || |||||||| || || ||||||||||| Sbjct 661506 TTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAAA 661565 Query 122797 GCAAAAAGGCGT 122808 || | ||||||| Sbjct 661566 GCGACAAGGCGT 661577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031795889600