Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 seq1 122 1e-22 >seq2 Length=3428829 Score = 266 bits (294), Expect = 4e-66 Identities = 893/1379 (65%), Gaps = 27/1379 (2%) Strand=Plus/Plus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| |||||||| || || | || |||| |||||||| || ||||| Sbjct 3421744 GTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGGGAAGTGGAGGCGGTAGGCATA 3421803 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | ||| ||| ||| |||| ||| | | | ||||| | ||| | | | Sbjct 3421804 GGGGCAACGAGGAGGGAGTTTCGGACACCGTGCTGCTTAATGGAAGCTCGGAGGGTGGAC 3421863 Query 118314 CAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAC 118373 ||||| || | ||| ||| ||| | ||| |||||||| |||| |||||| Sbjct 3421864 CAGTCCCAGAGGTCGGTTGGGACCCGACCCCAGAGATCGAACTGGAGTTTACCCTGGGAC 3421923 Query 118374 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 118433 || || ||||| ||||||| || ||| ||| |||| ||| | |||| Sbjct 3421924 ATGGGGGAACCCTCGTATGTCTCGTACTTACCCAGCTCCTGAGCCATCTCGCACGACGCC 3421983 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 118493 |||||||| || || || || || || || || | || | | ||| || | Sbjct 3421984 TCGAGGGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGG 3422043 Query 118494 GAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || || || | | || | ||||| | || || ||||| ||||||||||| || Sbjct 3422044 GACTCGAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAGACCCTGGACACCGAGACCG 3422103 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGATAAAAATTCCTA 118610 | || || || | ||| || || ||| | || ||| | | || || | || | Sbjct 3422104 ACGGGACGGTGACGCATGTTGGAGTTCTGCGC---CTCGATGACAGGGTAGTAGTTGCGC 3422160 Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 118670 ||| ||| | || || |||||||| ||||| |||||||| || ||||| | | Sbjct 3422161 GAGATGACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAG 3422220 Query 118671 TCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 ||| | ||| || |||| | ||| | || ||||||| || || || || || Sbjct 3422221 TCATAGACT-CGCTTCTCCATGTCGACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCA 3422279 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 |||| ||| || ||| |||||| ||||| || || || | || || || Sbjct 3422280 AACAGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTACAGAGATTGGAGGATTT 3422339 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 || || || | || || ||| || ||||| | ||| ||| |||||||| |||||| | Sbjct 3422340 GATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAA 3422399 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC 118909 || |||||||| ||||| | || ||||| || ||||| || |||| | Sbjct 3422400 GGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAGA-----GCTTCTGGGCC 3422454 Query 118910 --AGTGG-CGTTGG---CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 118963 | ||| | || | || ||| |||| |||||| |||||| || |||| Sbjct 3422455 TTAATGGTCTTTCGACCCTTGCCAGCCTTC-TCGTACGACTCGTAGAGCTGCTCGAACT- 3422512 Query 118964 TTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 119021 || || | | | || | || || || || | ||||| | ||| | ||| | Sbjct 3422513 -TCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCG 3422571 Query 119022 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 119081 || || ||| |||||||||||||||||||| | ||||||||| || ||||||| || Sbjct 3422572 CCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCA 3422631 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 || || | || || | || || || |||| || | || || | ||| || Sbjct 3422632 CGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCG 3422691 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---ACCAGCCTGGTTT 119198 |||||||| || || ||||| | || | | ||| ||| ||| |||||| Sbjct 3422692 GCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCG 3422751 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 || || | ||| ||||||| || | || ||||| || | |||||| | || | || Sbjct 3422752 ACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCG 3422811 Query 119259 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || ||| ||| ||||| | ||||| ||||||||| | || || || Sbjct 3422812 TTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCG 3422871 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 ||||| ||| ||||| ||||||||| | |||| | | ||||| || || |||||| Sbjct 3422872 CCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAG 3422931 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || |||| | || | |||||||||| |||||||| || |||| ||||| |||||| Sbjct 3422932 TCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTG 3422991 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAG 119498 ||||| || || | |||||| |||| | | ||||| || ||||||||| | | Sbjct 3422992 AAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATG 3423051 Query 119499 ACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || | ||||| | ||||| ||||||| | ||| ||||||| ||||| ||||| Sbjct 3423052 ACCTTGTCAATGTTGGCACCGTGGATACCGACAGCGACACGCATAATCATGTGCTGGGG 3423110 Score = 143 bits (158), Expect = 3e-29 Identities = 180/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||||||| ||||| |||||||| || || |||||| || || Sbjct 11614 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCC 11555 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||| Sbjct 11554 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGAT 11495 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191 ||||| || || || || | |||||||||||| || | |||||| || Sbjct 11494 ACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATG---TGGACTTGTCGTCCGT 11438 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | |||||| | |||||| | || || |||| ||| || |||| ||||| || || || Sbjct 11437 GATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTC 11378 Query 130252 AAAGAG 130257 |||||| Sbjct 11377 AAAGAG 11372 >seq1 Length=3588805 Score = 122 bits (134), Expect = 1e-22 Identities = 200/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 ||||| || ||| |||| || | | || || |||||||| |||||||||||||| Sbjct 59380 AATTATCGCGAAGCCTACGGGATGTACGCTTGTAACGGTATTCTATTCAACCACGAGTCT 59321 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCG-T 12043 ||||||||||| | | |||||| || |||||| || || || | ||| | Sbjct 59320 CCCCGTCGTGGGCGGACTTTCGTCACGCGCAAGATCTCCCGTGCCGTCGCCGAGATCCAT 59261 Query 12044 GGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACA 12103 |||| || | | || | | || ||||| ||||| || | ||||||||||| Sbjct 59260 CTCGGGCTCTCGG-ACTGTATCTACCTTGGTAACCTGGACGCCAAGCGAGACTGGGGACA 59202 Query 12104 TGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATA 12163 |||||| ||||| | || | |||||||| | || ||||| || |||||||| || | Sbjct 59201 TGCCAACGACTACATCGAGGGTATGTGGCTTATGCTGCAACAGGACGAGGCGGATGATTT 59142 Query 12164 TGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 ||| | ||| |||| ||||| ||| |||| | |||||||||||| Sbjct 59141 TGTTCTGGCGTCGGGCGAGACTCACCCCGTTCGAGAGTTCGTTGAG 59096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434999008560