Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 seq5 82.4 9e-11 >seq2 Length=3428829 Score = 212 bits (234), Expect = 7e-50 Identities = 682/1050 (65%), Gaps = 35/1050 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || ||||||| || || | ||||||| ||| Sbjct 3423110 CCCCAGCACATGATTATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGACAAGGTC 3423051 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||| | | |||| ||||| | || ||||||||| Sbjct 3423050 ATTGAGACCTACAACCTCATGTCTGAGCGATACTTCACCCACGCTTCCCCTACCCTCTTC 3422991 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || | ||||||||||| |||||||| | || | ||||| ||| Sbjct 3422990 AACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGAC 3422931 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | |||||||||| || || | | ||| ||||| ||||| ||| || || Sbjct 3422930 TCGATTGAGGGTATCTATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGACTGCAGGC 3422871 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || || || | |||||||| |||| | ||||| |||| ||| || || || Sbjct 3422870 GGGATCGGACTCCACATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAAC 3422811 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || | || | ||||| | || ||||| || | || ||||||| ||||| || || Sbjct 3422810 GGGTACTCGAACGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTC 3422751 Query 104582 AATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | || | || |||| ||| | | || |||| || ||||| |||||| Sbjct 3422750 GACCAGGGCGGTAACAAACGTC---CGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCAC 3422694 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || ||| | |||||||| || |||| ||||| ||| | ||||||| | |||| Sbjct 3422693 GCCGACATCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGG-TCCGTGC 3422635 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || || ||||||| ||| |||||||| | || |||||||||||| | || ||| | Sbjct 3422634 ACGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGA 3422575 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 ||| | ||| | ||| | || || | | || || ||||| |||||| | || Sbjct 3422574 CGGCGAGTGGACACTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGATGTCCACTCGGA 3422515 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG------AAGGTCGGGCGACTGCGAC 104868 | |||| || || ||| ||||||| | | | ||||| ||| | Sbjct 3422514 GAAGTTCGAGCAGCTCTACGAGTCGTACGAGAAGGCTGGCAAGGGTCGAAAGACCATTAA 3422455 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || |||| || | ||| || ||||| || ||||||||||||| ||| || Sbjct 3422454 GG-CCCAGAAGC-----TCTGGTTTGCCATTCTTGAGGCTCAAACCGAGACGGGTGGTCC 3422401 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| ||||| ||| ||| || ||| || | | ||| ||| Sbjct 3422400 CTTCATGCTCTACAAGGACGCGGCGAACGCCAAGTCGAACCAACAGCACCTCGGTACGAT 3422341 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 ||| |||||||||||||| || || | || | | | | || ||| ||||| Sbjct 3422340 CAAATCCTCCAATCTCTGTACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCTGT 3422281 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA---AGACATT 105105 || ||||| || || |||| |||||| | || || || || || || | | Sbjct 3422280 TTGCAACCTTGCCTCCCTCGCCCTCCCCGCATTCGTCGA--CATGGAGAAGCGAGTC-TA 3422224 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 ||| | | | || ||||||||| | || || |||||||| ||||| || || || Sbjct 3422223 TGACTTTAAGAAGCTCCACGAAATCACCAAGGTCGTCACCAAGAACCTTGACCAGGTCAT 3422164 Query 105166 TGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 | || | ||||| | | ||| || | || || || ||| | |||||||| Sbjct 3422163 CTCGCGCAACTACTACCCTGTCATCGAG---GCGCAGAACTCCAACATGCGTCACCGTCC 3422107 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 | ||||||||||| |||||||| || || Sbjct 3422106 CGTCGGTCTCGGTGTCCAGGGTCTTGCCGA 3422077 Score = 159 bits (176), Expect = 4e-34 Identities = 183/245 (75%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||||| ||||| | || | || || || | |||||||| || ||||| | ||| Sbjct 11372 CTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGACTGGGCGCTCAAG 11431 Query 94774 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| | || ||||| | || |||||||| ||| |||| ||||| || Sbjct 11432 TGGATCACGGACGACAAGTCCA---CATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTC 11488 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 ||||||||||||||||| ||||| ||| | | || | |||||||||||||| |||||| Sbjct 11489 GAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 11548 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 ||||| || ||| ||||||||||||||| ||||||||||| ||||| |||||| || Sbjct 11549 ATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGAC 11608 Query 94951 TTTGC 94955 ||||| Sbjct 11609 TTTGC 11613 >seq5 Length=1923346 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| ||||||||||| || || |||||||| || || || ||| ||| || | ||| Sbjct 661569 TCGCTTTTGCGTGTGTCGAAGGCATCTTCTTTTCGGGATCTTTCGCCGCCATCTTCTGGT 661510 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 | ||||| || ||||| ||||| || | ||||| |||||||||||| || || | Sbjct 661509 TAAAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCAGCCGAGATG 661450 Query 94934 AGGGA 94938 ||||| Sbjct 661449 AGGGA 661445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260610440240