Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 428 5e-115 >seq2 Length=3428829 Score = 428 bits (474), Expect = 5e-115 Identities = 950/1415 (67%), Gaps = 44/1415 (3%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 ||||| ||||| ||| ||||| |||||||| |||||| || | |||||| Sbjct 3421723 CGGCGAGCGTAGAGCATGGATGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGG 3421782 Query 78586 GCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTG 78645 | || |||||||| ||||| || || || || || || || || | ||| ||| ||| Sbjct 3421783 GAAGTGGAGGCGGTAGGCATAGGGGCAACGAGGAGGGAGTTTCGGACACCGTGCTGCTTA 3421842 Query 78646 AT-----CTCGACCTTTAGGCC-GTCCCAAAATTCATTCGC--CGCGATCCCCCACATGT 78697 || |||| | | || |||||| | || | | | ||| ||||| | | Sbjct 3421843 ATGGAAGCTCGGAGGGTGGACCAGTCCCAGAGGTCGGTTGGGACCCGA--CCCCAGAGAT 3421900 Query 78698 CCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCT 78757 | || || |||||| |||| || || |||| | | |||||||| ||| || Sbjct 3421901 CGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGTACTTACCCAGCT 3421960 Query 78758 CCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCT 78817 ||| || | ||||| ||| | ||||| || ||||| | | ||||||||| Sbjct 3421961 CCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGAAGATCTGGA 3422020 Query 78818 TGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGG 78877 ||||||||||||| || || ||||| | | || ||| ||| ||| | |||| Sbjct 3422021 TGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCATAAAGGCGTCGG 3422080 Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCT 78937 | || |||||||| |||| | ||| || ||||| ||||||||| || | ||||| Sbjct 3422081 CAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAGTTCTG---CGCCT 3422137 Query 78938 CGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAG 78994 || | ||||| |||| || |||||| ||| ||||| ||||||||| | Sbjct 3422138 CGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGACGACCTTGG 3422197 Query 78995 TCACCTCGTACAATTTGGCGAAATCAAAAT---GATT-TCCTTT--GATGAAAGTCGGTA 79048 | | |||| | || || ||| | | || ||| | || ||| | || | Sbjct 3422198 TGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGTCGACGAATGCGGGGA 3422257 Query 79049 GGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 || || || || |||||||| || || |||||| ||| ||| |||||| || | Sbjct 3422258 GGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGTACTCGATAATCT 3422317 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | || || | ||| || || ||||| || |||| || || ||||| ||| |||| Sbjct 3422318 CGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTTCG 3422377 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 |||||||||||| |||| | || || ||||| ||| || |||| | | Sbjct 3422378 CCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAA 3422437 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGA-------CGTAC 79281 ||||| | | ||||| || |||| ||||||| ||| | ||||| Sbjct 3422438 ACCAGAGCTTCTGGGCCTT---AATGGTCTTT---CGACCCT-TGCCAGCCTTCTCGTAC 3422490 Query 79282 GTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGC 79341 | | ||| | || | ||| |||| | |||||||| || || ||||||||| Sbjct 3422491 GACTCGTAGAGCTGCTCGAACTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCA 3422550 Query 79342 GGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATC 79401 |||||||| || ||| || ||||| ||| ||| || |||||||||||||| |||| Sbjct 3422551 GGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATC 3422610 Query 79402 CACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGC 79461 || ||||| ||||||||| || ||| | |||||| | || |||||| ||||| Sbjct 3422611 CAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGG 3422670 Query 79462 TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTG 79521 ||||| || || | ||||||||||||||| ||||| || |||||||| |||| ||| Sbjct 3422671 TCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGGA 3422730 Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 || ||| |||||||||| |||||| || |||||| || ||| ||||||||||||| Sbjct 3422731 CGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGT 3422790 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 ||||| |||| | | ||||| || ||| || | || | || || | || Sbjct 3422791 ACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTG 3422850 Query 79642 GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTC 79701 | ||||| |||||| || || | ||||||||| ||||||||| |||||| ||| Sbjct 3422851 TGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGGGTC 3422910 Query 79702 TCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGT 79761 || ||||| ||||| ||||||||||||||||| || || ||||||||| ||||| || Sbjct 3422911 TCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGG 3422970 Query 79762 GGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT- 79820 |||||| |||||||||||||||||||| || | ||||| |||||| | | ||| Sbjct 3422971 GGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAG----TATCGCTC 3423026 Query 79821 ---CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGC 79877 ||| || | ||| ||||| |||| | || | | |||||||| ||||| || Sbjct 3423027 AGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGACAGC 3423086 Query 79878 GACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGA 79912 ||| ||||| | | || |||||| |||| ||| Sbjct 3423087 GACACGCATAATCATGTGCTGGGGACGCTCGACGA 3423121 Score = 405 bits (448), Expect = 6e-108 Identities = 916/1368 (67%), Gaps = 18/1368 (1%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| ||||| ||||| || | | || | ||| ||||| ||| || Sbjct 3423095 ATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGACAAGGTCATTGAGACCTACAAC 3423036 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| || | |||||| ||||| | || ||||| |||||||||||||| | Sbjct 3423035 CTCATGTCTGAGCGATACTTCACCCACGCTTCCCCTACCCTCTTCAACGCCGGTACCCCC 3422976 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 ||||| || ||||| ||| ||||| ||||| |||||||| ||| |||||||| ||| Sbjct 3422975 AACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGACTCGATTGAGGGTATC 3422916 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 || ||||| |||||| ||||||||| ||||||||| | || || ||||| ||||| Sbjct 3422915 TATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGACTGCAGGCGGGATCGGACTCCAC 3422856 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA-CGG 19416 | ||| |||| | | || | || || || ||||| ||| ||| ||| Sbjct 3422855 ATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAACGG-GTACTCGAACGG 3422797 Query 19417 TATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGG 19476 |||||| || |||||||| | ||| || |||||| | |||||| ||||||| || Sbjct 3422796 TATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAGGGCGGTAA 3422737 Query 19477 CAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTT 19536 |||||| |||| |||| ||||||||||||||||| |||||||| ||| || | || || Sbjct 3422736 CAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACATCTTCGAGTT 3422677 Query 19537 CCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGC 19596 |||||| |||||| |||||| ||| | |||||| | || || ||||||||| || Sbjct 3422676 CCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGGTCCGTGCACGTGACCTCTTCTACGC 3422617 Query 19597 CTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGAT 19656 | | ||||| ||||||| |||||| || ||| ||| ||||| || ||| || || Sbjct 3422616 CCTCTGGATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGACGGCGAGTGGACACTCAT 3422557 Query 19657 GTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTA 19716 |||||| ||| ||||| || || |||| ||| || ||| |||| | || | || Sbjct 3422556 GTGCCCTGCCGAGTGCCCCGGTCTTGCCGATGTCCACTCGGAGAAGTTCGAGCAGCTCTA 3422497 Query 19717 CCGGACTTACG-TAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGG 19775 | | | |||| | | || || || | ||| | ||||| | | ||||| Sbjct 3422496 CGAGTCGTACGAGAAGGCTGGCAAGGGTCGA-AAGACCATTAAGGCCCAGAAGCTCTGGT 3422438 Query 19776 ACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCG 19835 | | || | || |||||| || || | |||| |||||||||||| | Sbjct 3422437 TTGCCATTCTTGAGGCTCAAACCGAGACGGGTGGTCCCTTCATGCTCTACAAGGACGCGG 3422378 Query 19836 CGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTG 19895 ||||||||||||| || || || || |||| ||||||| || ||||| || ||||| | Sbjct 3422377 CGAACGCCAAGTCGAACCAACAGCACCTCGGTACGATCAAATCCTCCAATCTCTGTACCG 3422318 Query 19896 AAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCC 19955 | || || ||| || || |||||| ||| || || || || || ||||| || Sbjct 3422317 AGATTATCGAGTACTCTGCCCCCGACGAGGTTGCTGTTTGCAACCTTGCCTCCCTCGCCC 3422258 Query 19956 TGCCGACTTTCGT---CAAGG----CCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTG 20008 | || | ||||| || || | | || |||||| || | |||| | Sbjct 3422257 TCCCCGCATTCGTCGACATGGAGAAGCGAGT-CTATGACTTTAAGAAGCTCCACGAAATC 3422199 Query 20009 ACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAG 20068 ||| ||||||||| || || | | |||||| || |||| ||||| | Sbjct 3422198 ACCAAGGTCGTCACCAAGAACCTTGACCAGGTCATCTCGCGCAACTACTACCCTGTCATC 3422139 Query 20069 GCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCC 20128 | ||||| || || || ||||| ||||| || ||| |||| |||||||| || ||| Sbjct 3422138 GAGGCGCAGAACTCCAACATGCGTCACCGTCCCGTCGGTCTCGGTGTCCAGGGTCTTGCC 3422079 Query 20129 GACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAG 20188 |||| || ||| ||| || | | ||||| ||| || ||||||||||||| Sbjct 3422078 GACGCCTTTATGGCGCTTCGCATGCCCTTCGAGTCCCCCGCCGCCCGCGAGCTCAACATC 3422019 Query 20189 GGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAG 20248 ||||||||| || | ||||| || |||||| || |||||||| | || | ||| Sbjct 3422018 CAGATCTTCGAGACCATCTACCATGCCGCCCTCGAGGCGTCGTGCGAGATGGCTCAGGAG 3421959 Query 20249 GACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGAC 20308 || ||||||||| | | |||| || ||| |||| |||||| |||||| || Sbjct 3421958 CTGGGTAAGTACGAGACATACGAGGGTTCCCCCATGTCCCAGGGTAAACTCCAGTTCGAT 3421899 Query 20309 ATGTGGG---GCGTC---ACTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAG 20362 | |||| | ||| || || | ||| | ||||| | | || ||| Sbjct 3421898 CTCTGGGGTCGGGTCCCAACCGACCTCTGGGACTGGTCCACCCTCCGAGCTTCCATTAAG 3421839 Query 20363 ACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAG 20422 ||||| | || ||||| | ||||| || || ||||| |||||||| || ||||| Sbjct 3421838 CAGCACGGTGTCCGAAACTCCCTCCTCGTTGCCCCTATGCCTACCGCCTCCACTTCCCAG 3421779 Query 20423 ATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 || | || |||||| |||||||| ||||| ||| ||||| Sbjct 3421778 ATTCTCGGCTGGAACGAGTGCTTCGAGCCCTACACATCCATGCTCTAC 3421731 Score = 122 bits (134), Expect = 1e-22 Identities = 208/297 (70%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 |||||||| ||||| ||||| ||| | ||||| | | ||||||| || | | | Sbjct 11306 ATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGACCCCGCACGCCGG 11365 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | || || ||||| ||||| ||||| ||| | || | ||||| || ||||| Sbjct 11366 ACCTACCTCTTTGACGCCATTGAGACCATCCCCTGCA-TCAAGAAGAAAGCCGACTGGGC 11424 Query 59945 CATGCAGTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 | ||||||| | | | || | |||| || | |||||||| || ||||| Sbjct 11425 GCTCAAGTGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTTTGCCGC 11484 Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || || ||||||||||| || || ||| | || ||||||||||| |||||||| Sbjct 11485 CGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGG 11544 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| || || | |||||||||||||| || || || || ||||| ||||| Sbjct 11545 TCTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCA 11601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524621729440