Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 seq5 109 6e-19 seq3 96.9 4e-15 >seq2 Length=3428829 Score = 288 bits (318), Expect = 1e-72 Identities = 411/570 (72%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| ||||| | ||||||||||||| | || | || | ||| |||||| ||| | Sbjct 3423095 ATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGACAAG-GTCATTGAGACCTACAA 3423037 Query 53254 CTTAATG----AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 | | ||| ||| | ||||| || ||||| | || ||||| |||||||| |||| Sbjct 3423036 CCTCATGTCTGAGCGA----TACTTCACCCACGCTTCCCCTACCCTCTTCAACGCCGGTA 3422981 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | |||| || ||||| ||||||||| |||||||||||||| |||||||| || | Sbjct 3422980 CCCCCAACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGACTCGATTGAGG 3422921 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | ||||| ||||| |||||| ||| || || ||||||||| | || || ||||| Sbjct 3422920 GTATCTATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGACTGCAGGCGGGATCGGAC 3422861 Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 ||||| | || ||||| || || || | || || || ||||| | | Sbjct 3422860 TCCACATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAACGGGTACTCGA 3422801 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||||| || |||||||| | ||| || |||||| || |||||| ||||||| | Sbjct 3422800 ACGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAGGGCG 3422741 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 || || || ||| |||| ||||||||||||||||| |||||||||||||| | | Sbjct 3422740 GTAACAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACATCTTCG 3422681 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT- 53667 |||| ||||| ||||| ||| || ||| | || ||| | || ||| |||||||| || Sbjct 3422680 AGTTCCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGGTCCG-TGCACGTGACCTCTTC 3422622 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || || ||||| |||||||||||||| | ||| ||| ||||| |||||| Sbjct 3422621 TAC-GCCCTCTGGATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGACGGCGAGTGGAC 3422563 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || |||||||| |||||||||||| || Sbjct 3422562 ACTCATGTGCCCTGCCGAGTGCCCCGGTCT 3422533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 328/504 (65%), Gaps = 15/504 (3%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 ||||||| | ||||| |||||| | || || || || |||||| ||| |||||| Sbjct 3422223 TGACTTTAAGAAGCTCCACGAAATCACCAAGGTCGTCACCAAGAACCTTGACCAGGTCAT 3422164 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 | || |||||||| | ||||| || |||||| | || ||||| ||| | Sbjct 3422163 CTCGCGCAACTACTACCCTGTCATCGAGGCGCAGAACTCCAACATGCGTCACCGTCCCGT 3422104 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTC 55275 || ||||||| ||||| | |||||| ||| ||| ||| | |||||||||| || Sbjct 3422103 CGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTTATGGCGCTTCGCATGCCCTTCGAGTC 3422044 Query 55276 GGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCG 55334 | || || || | ||| | |||||| || | ||||||| ||| || |||| Sbjct 3422043 CCCCGCCGCCCGCGAGCTCAACATCCAGATCTTCGAGAC-CATCTACCATGCCGCCCTCG 3421985 Query 55335 AGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCA 55393 ||| |||||| | ||||| | |||| ||| | |||||||| | | | ||| || Sbjct 3421984 AGGCGTCGTGCGAGATGGCTCAGGAGCT-GGGTAAGTACGAGACATACGAGGGTTCCCCC 3421926 Query 55394 GCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG-CAAGTCTGACCC--CATGTTTGAC 55450 | |||| |||||||||||||| ||||| | ||| | || | | | ||| Sbjct 3421925 ATGTCCCAGGGTAAACTCCAGTTCGATCTCTGGGGTCGGGTCCCAACCGACCTCTGGGAC 3421866 Query 55451 AAGTTGA-------AGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGC 55503 || | ||| | |||| | | || | || |||||||| ||||| || Sbjct 3421865 TGGTCCACCCTCCGAGC-TTCCATTAAGCAGCACGGTGTCCGAAACTCCCTCCTCGTTGC 3421807 Query 55504 GCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTA 55563 || ||||| ||||| || || | ||||| | ||| |||||| |||||||| || Sbjct 3421806 CCCTATGCCTACCGCCTCCACTTCCCAGATTCTCGGCTGGAACGAGTGCTTCGAGCCCTA 3421747 Query 55564 CACGACCAACATCTACCTGCGCCG 55587 ||| ||| ||||| ||||| Sbjct 3421746 CACATCCATGCTCTACGCTCGCCG 3421723 >seq5 Length=1923346 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 |||| || ||||||| ||| || | || ||||| || | | || ||||| || ||| Sbjct 661440 TGCGTTCCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCA 661499 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || ||||| ||||| |||||||| ||| || || ||||||||||||||||||||| Sbjct 661500 CGTTTCTTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACAC 661559 Query 74883 GCAAAGGCGACAAGGCGT 74900 ||||| |||||||||||| Sbjct 661560 GCAAAAGCGACAAGGCGT 661577 >seq3 Length=2003673 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 117344 GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACA 117403 |||||||| ||||||||||| ||| | || | ||||| | ||||||| || || Sbjct 810367 GCAAGACGGGTACCGAATTGACCATTAGGAGAAAGCAGGTTGATGTTGTTGCTTCCGACG 810426 Query 117404 AAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCC 117463 ||||||| || | |||||| || |||| || || ||||| |||||| Sbjct 810427 TAGTTTTGCGCAAGACCGACAATAGTGGTGGTGAGGGAGATTTCGCCGTGGTGGTACGCC 810486 Query 117464 GTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTC 117523 |||| |||| |||||||| ||||||| || ||||| || || | |||||| Sbjct 810487 GTCTTTTCCGAAACGTAGCCGACCAGCTGCGCAACCTTGATCTCCTTCTGCAGGTTTCGT 810546 Query 117524 TTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG 117583 |||| || | |||| ||| || ||||| | || || ||||| |||||||| |||| Sbjct 810547 TTGAAACAACCGTAAAGCACTTTACGCTGGCCGGGTTTGAGACCGTCCGCCACCGAAGGG 810606 Query 117584 ATCGAACG 117591 || || || Sbjct 810607 ATTGATCG 810614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215822154800