Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 302 5e-77 seq1 165 9e-36 seq4 147 2e-30 seq3 93.3 5e-14 seq5 86.0 7e-12 >seq2 Length=3428829 Score = 302 bits (334), Expect = 5e-77 Identities = 808/1225 (66%), Gaps = 15/1225 (1%) Strand=Plus/Plus Query 80537 GACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 ||||||| | ||| ||| | | |||| ||| || || ||| || | ||||||| Sbjct 3421889 GACCCCAGAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGT 3421948 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 || ||| | || |||| ||| |||||| || ||||| || || || ||| || Sbjct 3421949 ACTTACCCAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCT 3422008 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| |||| | |||| || ||| ||||| | || || | | || Sbjct 3422009 CGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCA 3422068 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 | || |||| || || ||||| || |||| ||| || ||||| ||| |||| || Sbjct 3422069 TAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAGT 3422128 Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAA 80836 || ||||| | ||||| |||| |||||| ||| ||||| || | Sbjct 3422129 TCTGCGCCTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGA 3422188 Query 80837 CAACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTGGTTCCCCTTC---ACAA 80890 | ||| || | || || || |||| |||||| || | | ||| || | || | Sbjct 3422189 CGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGTCGACGA 3422248 Query 80891 ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACT 80950 |||| || ||| ||||| || || ||||| || || ||||| || | | | ||| Sbjct 3422249 ATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGTACT 3422308 Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010 ||| || || || || | ||| || || || || ||||| |||| | ||||| |||| Sbjct 3422309 CGATAATCTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCGACT 3422368 Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070 ||||||| |||||||||||| |||| | || ||| |||||| || | || | Sbjct 3422369 TGGCGTTCGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAA 3422428 Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130 | ||||| ||| | || | ||||| | ||| || ||||| | | | | Sbjct 3422429 GAATGGCAAACCAGAGCTTCTGGGCCTTAATGGTCTTTCGACCCTTGCCAGCCTTCTCGT 3422488 Query 81131 ACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 || |||| |||| | |||||||| | ||| | || | || | ||||||||| Sbjct 3422489 ACGACTCGTAGAGCTGC-TCGAACTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCG 3422547 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 ||||||||| || ||| ||| ||| ||| || ||||||||| ||| | | Sbjct 3422548 GCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAG 3422607 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 |||||||||||| ||| ||||| || ||| || ||||||| | ||| ||||| ||| Sbjct 3422608 ATCCAGAGGGCGTAGAAGAGGTCACGTGCA-CGGACCTCCTCCTTACCGTGGTTCTTGCG 3422666 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || ||||| || || | |||||| || ||||| ||||| || || | ||| | || || Sbjct 3422667 CAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCC 3422726 Query 81369 CTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 | || | || ||||||| |||||| || || || |||| || | || | ||| Sbjct 3422727 CGGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCAT 3422786 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | |||||| | || | ||||| ||||| | || || ||||||||||| || Sbjct 3422787 GGGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGAC 3422846 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCAT 81545 ||| ||| || ||||| || |||| ||| || ||||| || ||| || | Sbjct 3422847 ATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAG 3422906 Query 81546 GGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACAT 81605 ||||||||| || ||||| || || | ||||| | | | ||| ||| |||||| Sbjct 3422907 GGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACAT 3422966 Query 81606 CTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 || ||| | | ||||| ||||| || || |||| ||||| |||| || || | Sbjct 3422967 TTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTC 3423026 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCGATAG 81724 ||||| |||| ||||| || |||| | || ||| | | ||||||| ||||||| || Sbjct 3423027 AGACATGAGGTTGTAGGTCTCAATGAC-CTTGTCAATGTTGGCACCGTGGATACCGACAG 3423085 Query 81725 CTACACGCATAAACATGTACTGGGG 81749 | |||||||||| ||||| |||||| Sbjct 3423086 CGACACGCATAATCATGTGCTGGGG 3423110 >seq1 Length=3588805 Score = 165 bits (182), Expect = 9e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || || || ||||| || || ||||||||||||||||| | Sbjct 3580003 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTTGAGGTTGAGTCGAG 3579944 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| || || |||||||||||||| || || |||||||| Sbjct 3579943 CGACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCA 3579884 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | || ||||| || || || ||||| |||| || || || | ||||| || Sbjct 3579883 ACAGCGATTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGCTGTCCGACTACAA 3579824 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | |||| ||||| || || || || || |||||||| Sbjct 3579823 TATCCAGAAGGAGTCAACACTGCACCTCGTCTTGCG 3579788 Score = 156 bits (172), Expect = 5e-33 Identities = 140/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| |||||||||||||| || || |||||||||||||| Sbjct 3580275 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCC 3580216 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||||||||||||||| || || ||||||||| Sbjct 3580215 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 3580156 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| | || |||||||||||||| || || |||| || || || | ||||| Sbjct 3580155 CAGCGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACTCTTTCCGACTA 3580100 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| |||||||| ||||||||||| ||||| || | || | ||| | ||| Sbjct 3580528 CTCACCGGAAAGACTATCACTCTTGAGGTCGAGTCTTCCGACACGATCGACAATGTCAAG 3580469 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||| ||||| ||||| |||||||||||||| | ||||| || || Sbjct 3580468 GCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAGCAGCGATTGATTTTCGCCGGG 3580409 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | || ||||| | ||||| Sbjct 3580408 AAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTA 3580374 Score = 116 bits (128), Expect = 4e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || |||||||| || || || || ||||||||||| || | ||||| Sbjct 3580861 GTCAAGACCCTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGAC 3580802 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| ||||| |||||||||||||| | ||| Sbjct 3580801 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATT 3580742 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| | ||||| | || ||| | | ||||| Sbjct 3580741 TTCGCCGGCAAGCAGTTGGAGGACGGCCGAACCTTGTCTGACTA 3580698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 27501 CAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || |||||| ||||| ||||||||||||||||| || ||||| || ||||| || ||||| Sbjct 3579631 CAGGGAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTTGCCGGAAAGCAGCTGGAGGA 3579572 Query 27561 TGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGC 27619 | | || | ||| ||||| || |||| ||||| ||| || || | || |||| Sbjct 3579571 CGGGAGGACGTTGAGC-GACTACAACATCCAGAAGGAGAGCACCCTGCACTTGGTGTTGC 3579513 Query 27620 GTCTTCGCGGTGGACA 27635 ||||||| ||||| || Sbjct 3579512 GTCTTCGTGGTGGTCA 3579497 >seq4 Length=1954963 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || || || || || || | ||| | ||| | ||| Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| ||||| ||||||||||||||||| ||||| || || Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||| | ||| ||||| | ||||| || |||| ||||| || || || Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || |||||||| || ||||| Sbjct 837923 CACTTGGTGTTGCGTCTGCGTGGTGG 837948 >seq3 Length=2003673 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || ||||| ||||| || | || | ||| | ||| Sbjct 927413 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 927354 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || |||||||||||||| | ||||| || || Sbjct 927353 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGATTGATTTTCGCCGGA 927294 Query 27547 AAGCAACTCGAGGA 27560 ||||| | ||||| Sbjct 927293 AAGCAGTTGGAGGA 927280 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 ||||||||||| ||||| || ||||| || ||| | |||| || |||| ||| Sbjct 810599 GTGGCGGACGGTCTCAAACCCGGCCAGCGTAAAGTGCTTTACGGTTGTTTCAAACGAAAC 810540 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTAT 32097 ||| || || || ||||| ||||||||| |||||||| | || | ||||| || Sbjct 810539 CTGCAGAAGGAGATCAAGGTTGCGCAGCTGGTCGGCTACGTTTCGGAAAAGACGGCGTAC 810480 Query 32098 CACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGT 32157 ||||||||||| || ||| ||| |||||| ||||| || |||| ||||| Sbjct 810479 CACCACGGCGAAATCTCCCTCACCACCACTATTGTCGGTCTTGCGCAAAACTACGTCGGA 810420 Query 32158 GCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCG 32212 || ||| | ||| | || || ||| || || || ||||| || |||| Sbjct 810419 AGCAACAACATCAACCTGCTTTCTCCTAATGGTCAATTCGGTACCCGTCTTGCCG 810365 >seq5 Length=1923346 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||||| ||||| || |||||||| || || ||| | || |||||| || Sbjct 661567 GCTTTTGCGTGTGTCGAAGGCATCTTCTTTTCGGGATCTTTCGCCGCCATCTTCTGGTTA 661508 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || || || || |||||||| || || | || ||||||||||| ||| || || ||| Sbjct 661507 AAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCAGCCGAGATGAG 661448 Query 64846 GG 64847 || Sbjct 661447 GG 661446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310214649120