Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 3e-14 seq1 86.0 4e-12 >seq4 Length=1954963 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||| || || || || || || Sbjct 837939 AGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGA 837880 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 837879 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCC 837820 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 837819 TTGTCCTGGATCTT 837806 >seq1 Length=3588805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || || ||||||||||| || ||||| || || Sbjct 3579500 CCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3579559 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | | |||| || || || || |||||||| || | |||||| ||||| || || Sbjct 3579560 AACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 3579619 Query 34600 ACTCCCTCCTTG 34611 | |||||| || Sbjct 3579620 ATACCCTCCCTG 3579631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| || | || || || |||||| || || || || || || || || || | Sbjct 3579788 CGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCA 3579847 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || ||||| |||||||| || || ||||||||||| || || | ||||||||| Sbjct 3579848 TCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTG 3579907 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTAT 34670 || |||||| |||| || ||||| ||| ||| || || | || || Sbjct 3579908 TCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCG-ACTCAACCTCAAGAGTGAT 3579966 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || | ||||| ||||| |||||||| Sbjct 3579967 GGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729500270058