Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 seq1 140 8e-28 seq3 95.1 3e-14 seq2 93.3 1e-13 >seq4 Length=1954963 Score = 145 bits (160), Expect = 2e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||| || || | ||||||| || || |||||||| Sbjct 837925 GTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACCGTCCTCCAGCTG 837866 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || || || || ||||| || |||| || ||||||||||||||||| Sbjct 837865 CTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTT 837806 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||||||||| || ||| || ||||| ||||||||||| ||||| Sbjct 837805 GGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATCGTCTTGCCCGT 837746 Query 211091 GAG 211093 || Sbjct 837745 AAG 837743 >seq1 Length=3588805 Score = 140 bits (154), Expect = 8e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||| || || ||||| || ||||| || || || | || || | |||||||| Sbjct 3579793 GACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCATCTTC 3579852 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||| ||||| || ||||| | || |||||||| || || | || ||||||||||| Sbjct 3579853 GAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTG 3579912 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 |||||| || || || ||||||||||| ||| |||||||| |||||||| || Sbjct 3579913 GATCTTCGCCTTTACATTGTCGATGGTGTC---GCTCGACTCAACCTCAAGAGTGATGGT 3579969 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || ||||| | ||||||| Sbjct 3579970 TTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||| || | ||||||||||||||||| || || ||||| | || || ||| Sbjct 3580100 TAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 3580159 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||| ||||| || || || ||||||||||| || Sbjct 3580160 TCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAC 3580219 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||||||||| || || || ||||| || || | |||||| Sbjct 3580220 GACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || |||| ||||||||| ||||| || | || || ||||| || |||| || ||| Sbjct 3580716 CCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 3580775 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || ||||| || |||||||| ||| ||||||||||| ||| Sbjct 3580776 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTG 3580835 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || || || ||||| ||||| || Sbjct 3580836 ATGGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| ||||| | || || || |||||||| || ||||| || | || || ||| Sbjct 3580374 TAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGG 3580433 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || |||| || || |||||||||||||| || || || ||||| ||||| || Sbjct 3580434 TCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGAA 3580493 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || ||||| |||||||| |||||||| ||||| Sbjct 3580494 GACTCGACCTCAAGAGTGATAGTCTTTCCGGTGAG 3580528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||||||| ||||| || || || || |||||||| ||| || ||||| ||||| Sbjct 3579676 CTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGAGT 3579735 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||||||| ||||| || || | |||||| Sbjct 3579736 GATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCAT 3579774 >seq3 Length=2003673 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || |||| |||||| || ||||| || | || || ||||| || || | || ||| Sbjct 927277 CCGTCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGGATACCCTCC 927336 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || || || ||||| ||||| ||| || |||||||| ||| Sbjct 927337 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTG 927396 Query 211077 ATCGTCTTTCCCGTGAG 211093 || ||||| ||||| || Sbjct 927397 ATGGTCTTGCCCGTAAG 927413 >seq2 Length=3428829 Score = 93.3 bits (102), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 178136 ATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCT 178195 |||||||| ||| ||| | ||||||| | |||||| | ||| |||| |||||| Sbjct 3422395 ATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAGAGCTTCTGGGCC 3422454 Query 178196 CGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCC 178255 | |||||| | || || | ||||||||| | |||||||| |||||| | | Sbjct 3422455 TTAATGGTCTTTCGACCCTTGCCAGCCTTCTCGTACGACTCGTAGAGCTGCTCGAACTTC 3422514 Query 178256 GGTCCA--TAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGAC 178313 ||| | |||||| | |||||||| ||| ||||| | ||| |||||| | Sbjct 3422515 --TCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGC 3422572 Query 178314 CGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||| || || || |||||||||||||| ||| |||||| ||| ||||| Sbjct 3422573 CGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAA 3422624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151613857490