Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 seq1 123 6e-23 seq3 107 5e-18 seq2 89.7 1e-12 >seq4 Length=1954963 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | |||||| || || || || |||| ||||| || | || || Sbjct 837943 ACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 837884 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || ||||| || || || || ||||| || |||||||| Sbjct 837883 CCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACC 837824 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||| || || | Sbjct 837823 CTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAG 837764 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||||||||||||||| Sbjct 837763 GGTGATCGTCTTGCCCGT 837746 >seq1 Length=3588805 Score = 123 bits (136), Expect = 6e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| |||| | ||| | ||||||||| |||||||| ||||| ||||| | ||| | Sbjct 3580095 CACTGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCT 3580154 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| ||||| ||||| |||||||| || ||||| ||| ||| |||||||||| Sbjct 3580155 GCTGGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGT 3580214 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | || | || || || | |||||||||||||| || | || || | ||| | |||| Sbjct 3580215 CGGACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCA 3580274 Query 225713 T 225713 | Sbjct 3580275 T 3580275 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || || ||| ||||| || || || || || |||| |||||| |||| || || | || Sbjct 3579787 TCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCC 3579846 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| ||||| || || || ||||| | ||| |||||||| || || ||||| ||||| Sbjct 3579847 ATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTT 3579906 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| ||||||||||| | || || || | ||||| Sbjct 3579907 GTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGAGTGAT 3579966 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || | ||||| | || | |||||| Sbjct 3579967 GGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| || | || || | || || || ||||||||||| ||||| || | ||| | Sbjct 3580369 CACTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCT 3580428 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| || |||||||| || ||||| |||||||| ||| ||| ||||| |||| Sbjct 3580429 GCTGGTCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGT 3580488 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || | || || || | ||||| ||||| || || Sbjct 3580489 CGGAAGACTCGACCTCAAGAGTGATAGTCTTTCCGGT 3580525 >seq3 Length=2003673 Score = 107 bits (118), Expect = 5e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| ||| |||||||| || || || | |||||| || ||||| || | ||| | Sbjct 927254 CACTGTAGTCGCTCAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAATCGCT 927313 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| || || ||||| |||||||| |||||||| ||| ||| ||||| |||| Sbjct 927314 GCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGT 927373 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||| || || || | ||||| ||||||||||| Sbjct 927374 CCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 927410 >seq2 Length=3428829 Score = 89.7 bits (98), Expect = 1e-12 Identities = 171/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGC 193583 ||||| ||||||| |||||||| ||| ||| | |||||| | |||||| | | Sbjct 3422380 GCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAAC 3422439 Query 193584 CAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTAC 193643 || || | || || || | ||| ||| |||| || || |||||||| ||||| Sbjct 3422440 CAGAGCTTCTGGGCCTTAATGGTCTTTCGACCCTTGCCAGCCTTCTCGTACGACTCGTAG 3422499 Query 193644 AGTTCCTCAAAATCTTGTCCG--TAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAA 193701 || | ||| || ||| |||| | || ||| | |||||||| || ||||| | Sbjct 3422500 AGCTGCTCGAA--CTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAGGGCACA 3422557 Query 193702 AGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGG 193761 ||| |||| || || || || |||| ||||||||||||||| || |||| | || Sbjct 3422558 TGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGG 3422617 Query 193762 CGTAGAAAAG 193771 ||||||| || Sbjct 3422618 CGTAGAAGAG 3422627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530802738044