Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 161 2e-34 seq1 149 1e-30 seq3 109 1e-18 >seq4 Length=1954963 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | |||| || | ||| || || |||||||||||||||| Sbjct 837949 ACCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGA 837890 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||| || |||| ||| || ||||| || Sbjct 837889 CAGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGG 837830 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || || || | ||||| ||||| || | |||||| Sbjct 837829 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGAC 837770 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 |||||| ||||||||||| ||||| Sbjct 837769 TTCGAGGGTGATCGTCTTGCCCGT 837746 >seq1 Length=3588805 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | |||||||||||||| || || ||||| ||||||||| Sbjct 3579812 TCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 3579871 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || |||||||| || |||||||||||||| |||||||| || ||||| | Sbjct 3579872 ATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 3579931 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | || || || |||||||| || || || || | || || || Sbjct 3579932 TCGATGGTGTCGCTCGACTCAACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 3579991 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 3579992 AAGATCTGCATT 3580003 Score = 136 bits (150), Expect = 8e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| ||||| ||||| || || || || || ||||||||||| || || | Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||| |||||||||||||| || ||||| || || || | ||||| ||||| | Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | || || || || ||||||||||| || || | ||||| ||||| |||||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 125 bits (138), Expect = 1e-23 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || |||||||| ||||| || || |||||||| || ||||| || || | Sbjct 3580372 TGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCT 3580431 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||||||||||| ||||| |||||||| || || || | ||||| ||||| | Sbjct 3580432 GGTCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGG 3580491 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| || |||||||| ||||| || || Sbjct 3580492 AAGACTCGACCTCAAGAGTGATAGTCTTTCCGGT 3580525 Score = 114 bits (126), Expect = 3e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 ||||||||| |||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 3580696 TGTAGTCAGACAAG-GTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGC 3580754 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| ||||||||||||||||| |||||||| || || ||| | || || |||||| Sbjct 3580755 TGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCC 3580814 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | || || ||||| ||||| || || || || | ||||| || Sbjct 3580815 GAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 3580861 >seq3 Length=2003673 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 || ||||| ||||| | || || ||||| || ||||| || || ||||| || ||| Sbjct 927271 GTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGGATA 927330 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| |||||||| | ||||| ||| Sbjct 927331 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCG 927390 Query 283056 AGAGTGATCGTCTTACCCGT 283075 || ||||| ||||| ||||| Sbjct 927391 AGGGTGATGGTCTTGCCCGT 927410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738851305004