Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq4 123 2e-23 >seq1 Length=3588805 Score = 127 bits (140), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| || ||| || ||||| || || |||||| ||||| ||||| || Sbjct 3579772 CATACCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTC 3579831 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| || |||||||||||||| ||||| || |||| Sbjct 3579832 GGACAGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGG 3579891 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | ||| ||||| ||| |||||| ||| || ||| | ||||||||| || Sbjct 3579892 GGGGATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGT--CGATGGTGTCGCTCGAC 3579949 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || || || || |||||||| || || ||||| ||||| Sbjct 3579950 TCAACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 125 bits (138), Expect = 5e-24 Identities = 137/180 (76%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| |||| || |||| | || ||||||||||| || ||||||||||| ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTC 44277 | |||| || | ||| ||||| ||| |||||| ||| || ||| | |||||||| Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGT--CGATGGTGTC 3580215 Query 44278 GGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| | || |||||||| || || |||||||| |||||||| ||||| Sbjct 3580216 GGACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 95.1 bits (104), Expect = 9e-15 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||| || ||||||||||| ||||||||||| ||| | | | |||| Sbjct 3579514 CAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCGTC 3579573 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 ||||||||||| ||||||||||| | ||||||||| |||| || | ||| ||| Sbjct 3579574 CTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCC 3579628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| |||| |||||| ||||| || ||||| |||||||| |||| || | ||| |||| Sbjct 3580717 CGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCCT 3580776 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | |||||||| | ||| || ||||| | || | Sbjct 3580777 TGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGA 3580836 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || || ||||||||||| || Sbjct 3580837 TGGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||||||||| || ||||| |||||||| |||| || | ||| || | Sbjct 3580393 CGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTT 3580452 Query 44241 TTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 | ||| ||||| ||| || ||| | || ||||||| || || ||||| | || Sbjct 3580453 TGTCCTGGATCTTGGCCTTGACATTGT--CGATCGTGTCGGAAGACTCGACCTCAAGAGT 3580510 Query 44299 AATCGTCTTTCCCGTGAGG 44317 || |||||||| |||||| Sbjct 3580511 GATAGTCTTTCCGGTGAGG 3580529 >seq4 Length=1954963 Score = 123 bits (136), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||| ||| ||||| |||||| ||||||||||| || | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| ||||||||||| ||||| || |||| ||||||||| |||| || Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| ||||| ||| || ||| | |||||||||| ||||| | Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGACGATTCGA 837771 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | || | || |||||||| ||||| ||| Sbjct 837770 CTTCGAGGGTGATCGTCTTGCCCGTAAGG 837742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990285928042