Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq4 118 3e-21 seq3 104 6e-17 >seq1 Length=3588805 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || || ||||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 3579999 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTTGAGGTTGAGTCGAGC--- 3579943 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || || || ||||| |||||||| || || ||||| || ||||| Sbjct 3579942 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAA 3579883 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | ||||| ||||| ||||||||||||||||| | || || |||| || || Sbjct 3579882 CAGCGATTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGCTGTCCGACTACAAT 3579823 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 |||| || || ||||||||||| || || ||| || Sbjct 3579822 ATCCAGAAGGAGTCAACACTGCACCTCGTCTTGCGA 3579787 Score = 132 bits (146), Expect = 1e-25 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||| ||||| || || ||| Sbjct 3580272 CAGATCTTCGTCAAGACCCTTACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCCGAC 3580213 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 3580212 ACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAGCAG 3580153 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| || || || ||||| |||||||| | |||||| |||| || Sbjct 3580152 CGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACTCTTTCCGACTA 3580100 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 3580861 GTCAAGACCCTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGAC 3580802 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| |||||||| || || || || || |||||||| ||| | || Sbjct 3580801 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATT 3580742 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGG 178078 |||||||| || ||| | || || || Sbjct 3580741 TTCGCCGGCAAGCAGTTGGAGGACGG 3580716 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 3580528 CTCACCGGAAAGACTATCACTCTTGAGGTCGAGTCTTCCGACACGATCGACAATGTCAAG 3580469 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||||||||| || || || || |||||||| ||| | || |||||||| Sbjct 3580468 GCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAGCAGCGATTGATTTTCGCCGGG 3580409 Query 178062 AAACAGCTCGAAGATGG 178078 || |||||||| || || Sbjct 3580408 AAGCAGCTCGAGGACGG 3580392 Score = 86.0 bits (94), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| ||||| |||||||| || |||||||| ||| ||| Sbjct 3579771 CAGATTTTCGTCAAGACCCTCACGGGAAAGACGATCACTCTTGAGGTGGAGAGCAGCGAC 3579712 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAA 178018 ||||| || || ||||| |||||||||||||| Sbjct 3579711 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAA 3579677 >seq4 Length=1954963 Score = 118 bits (130), Expect = 3e-21 Identities = 139/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || |||||||||||||| || ||| || ||||||||||| || ||||| Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || || || || |||||||| || || || |||||||| Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || ||||| || || || |||| || | || || ||| |||| || || || || || Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922 Query 178122 CATCTTG 178128 || |||| Sbjct 837923 CA-CTTG 837928 >seq3 Length=2003673 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||||||||| || ||| ||||| ||||| || ||||| Sbjct 927413 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 927354 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| ||| | || ||||||||| Sbjct 927353 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGATTGATTTTCGCCGGA 927294 Query 178062 AAACAGCTCGAAGATGG 178078 || ||| | || || || Sbjct 927293 AAGCAGTTGGAGGACGG 927277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730799007044