Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 seq1 129 5e-25 >seq4 Length=1954963 Score = 129 bits (142), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| ||||||| || ||||| ||||||||| ||||| ||||| Sbjct 837952 ACCACCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC 837893 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || |||| || ||||||||||||||||| ||||| ||||| ||||| | Sbjct 837892 AGACAGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGG 837833 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 ||||| | |||||||||| ||| || ||| || | || | |||||| ||| Sbjct 837832 GGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCGGACGAT 837775 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 || || || | || ||||| || ||||| || Sbjct 837774 TCGACTTCGAGGGTGATCGTCTTGCCCGTAAG 837743 >seq1 Length=3588805 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || || || ||||| || ||||||||| || || |||||||| || ||||| | Sbjct 3579788 CGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCA 3579847 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||| |||||||| || |||| ||||||||||| | ||| | | ||||||| Sbjct 3579848 TCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTG 3579907 Query 41768 TCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 ||| ||| || ||| || | || | |||||||||||||| ||||| | || | Sbjct 3579908 TCCTGGATCTTCGCCTTTACATTGTCG--ATGGTGTCGCTCGACTCAACCTCAAGAGTGA 3579965 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| || || || || || || || |||||||| Sbjct 3579966 TGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 3579500 CCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3579559 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | |||| || |||||||| ||||| || || || ||||| ||||| | |||| Sbjct 3579560 AACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 3579619 Query 41756 ACGCTCTCCTTG 41767 | | |||| || Sbjct 3579620 ATACCCTCCCTG 3579631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303849751200