Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq35 104 5e-17 seq29 104 5e-17 seq23 104 5e-17 seq20 93.3 9e-14 seq21 89.7 1e-12 >seq35 Length=121122 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 230396 AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCA 230455 |||| || || | ||| ||||||||| | | ||||| |||| ||||| ||||||| Sbjct 13610 AAGCCGTCGAGATCGAGAAGGAGTTCCTGTCCGACGCCCTTCCCGTCCGCCTCATTGGCA 13551 Query 230456 TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCAC 230515 ||||||| || | ||| | || |||||||| |||||||| || | | | || |||| Sbjct 13550 TGAACGCAGAGCAGATGTGCCAATACATCGAGTTCGTAGCAGATAGACTACTAGTAGCAC 13491 Query 230516 TTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 | ||| ||||||| ||| |||| ||||| || | ||||||||| | ||||||| Sbjct 13490 TGGGTAACGAGAAGCACTACGGTTCTACAAACCCATTCGACTTTATGGAGATGATTTCGC 13431 Query 230576 TTCAAGGGAAGACCAAC 230592 | || ||||| ||| Sbjct 13430 TCGCGGGCAAGACAAAC 13414 >seq29 Length=171343 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 230396 AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCA 230455 |||| || || | ||||||||||||| | | || || | || ||||| || |||| Sbjct 53947 AAGCCGTCGAGATCGAAAAGGAGTTCCTCTCCGATGCCCTCCCCGTCCGCCTCATCGGCA 53888 Query 230456 TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCAC 230515 ||||||| || | ||| | ||||||||||| || ||||| ||| | | | || |||| Sbjct 53887 TGAACGCAGAGCAGATGTGCCAGTACATCGAGTTTGTAGCAGACAGACTACTAGTAGCAC 53828 Query 230516 TTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 | ||| | ||||| |||||||| |||||| || | || |||||| | ||||||| Sbjct 53827 TGGGTAATGAGAAGCACTACAACTCGGCGAACCCATTCGACTTCATGGAGATGATTTCGC 53768 Query 230576 TTCAAGGGAAGACCAAC 230592 | || ||||||||| Sbjct 53767 TGGCGGGCAAGACCAAC 53751 >seq23 Length=274361 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 230396 AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCA 230455 |||| || || | ||| ||||||||| | | ||||| |||| ||||| ||||||| Sbjct 223441 AAGCCGTCGAGATCGAGAAGGAGTTCCTGTCCGACGCCCTTCCCGTCCGCCTCATTGGCA 223382 Query 230456 TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCAC 230515 ||||||| || | ||| | || |||||||| |||||||| || | | | || |||| Sbjct 223381 TGAACGCAGAGCAGATGTGCCAATACATCGAGTTCGTAGCAGATAGACTACTAGTAGCAC 223322 Query 230516 TTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 | ||| ||||||| ||| |||| ||||| || | ||||||||| | ||||||| Sbjct 223321 TGGGTAACGAGAAGCACTACGGTTCTACAAACCCATTCGACTTTATGGAGATGATTTCGC 223262 Query 230576 TTCAAGGGAAGACCAAC 230592 | || ||||| ||| Sbjct 223261 TCGCGGGCAAGACAAAC 223245 >seq20 Length=513148 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 |||||||| || ||||| |||||||||||||| || || |||||||| | || | || Sbjct 349517 CAAGCATCTACTTCTGAGCTGTATGGAAAAGTACAGGAGGTTCCTCAATCCGAGACAACG 349576 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || || || ||| || |||||||| ||||| || || | | |||||| || Sbjct 349577 CCTTTCTACCCGCGTTCACCATATGGTGTAGCAAAGCTTTATGGGTTCTGGATAGTCAAG 349636 Query 61209 AATTACCGCGAGTCGTATGGAATG 61232 ||||| || || |||||||| ||| Sbjct 349637 AATTATCGAGAATCGTATGGCATG 349660 >seq21 Length=442779 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 |||||||| ||||| || || ||||||||||| || ||| | |||||| | || | || Sbjct 186644 CAAGCATCTACATCCGAGCTATATGGAAAAGTACAGGAAGTACCTCAATCCGAGACAACA 186585 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || || |||||| || ||||| || || || || || | |||||||| || Sbjct 186584 CCCTTCTACCCTCGTTCACCTTATGGCGTAGCTAAGCTTTATGGCTACTGGATAGTCAAG 186525 Query 61209 AATTACCGCGAGTCGTATGGAATG 61232 ||||| |||||||| || || ||| Sbjct 186524 AATTATCGCGAGTCTTACGGCATG 186501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821912781020