Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq11 86.0 7e-12 >seq1 Length=6229779 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 52866 |||||| ||||| | || || | |||||| || || ||||||||||| || || || Sbjct 992840 TGTGAACTGAATAGCGCCGACAGCAGCTTTCGTTCGAAGGTAGTACATTCCAGTCTTGAG 992781 Query 52867 ACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG--ATCTGCT 52924 ||| ||||||| || || |||||| || |||| | || | || || ||| Sbjct 992780 ACCTTTCTTCCATCCATAGAAGTGCATAGAAGTAAGTTGAGCGAAAGTGGGTGAT-TGCA 992722 Query 52925 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 52984 | ||||| || | |||||| |||||||||||||||||| ||||| || | ||| | Sbjct 992721 AG-TGGATGTTGAGAGATTGTGATTGATCGATGAAGGCTCCTCTGTCCGCTGACATGTCA 992663 Query 52985 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC-TTAATATCTTCTGG 53043 ||||| |||| || || ||||| | ||| ||||| | || ||||| || ||||| Sbjct 992662 ATGATACTCTTCTGACTGATCTCCCATACTGTTCGATAAA-TAGCTTTAATCTCATCTGG 992604 Query 53044 AAGG 53047 ||| Sbjct 992603 TAGG 992600 >seq11 Length=1302298 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| ||||| | | || ||| | ||| || || || |||||||||||||| || ||| Sbjct 897477 GTGAACTGAATAGCACCGACTGCAGCTTTTGTGCGGAGGTAGTACATTCCCGTCTTGAGA 897418 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| |||||||| ||||| ||| |||| | || | || | | Sbjct 897417 CCTTTCTTCCAGCCGTAAAAGTGCATGGATGTGAGTTGAGCGAAAGTGGGGGATTGGAGG 897358 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 |||||||| | ||||| |||||| || || || || |||||||||| ||| | ||| Sbjct 897357 TGGATATTGAGTGATTGCGATTGATCAATAAACGCGCCTCTGTCTGCAGACATGTCAATG 897298 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || |||| || || ||||| | ||| | || | ||| || || ||||| ||| Sbjct 897297 ATGCTCTTCTGACTGATCTCCCACACTGTTCTGTAGATAGCCTTGATCTCATCTGGTAGG 897238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720457085920