Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq11 89.7 6e-13 >seq1 Length=6229779 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 |||||| ||||| | || || | |||||| || || ||||||||||| || || || Sbjct 992840 TGTGAACTGAATAGCGCCGACAGCAGCTTTCGTTCGAAGGTAGTACATTCCAGTCTTGAG 992781 Query 62105 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG--ATCTGCT 62162 ||| ||||||| || || |||||| || |||| | || | || || ||| Sbjct 992780 ACCTTTCTTCCATCCATAGAAGTGCATAGAAGTAAGTTGAGCGAAAGTGGGTGAT-TGCA 992722 Query 62163 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62222 | ||||| || | |||||| |||||||||||||||||| ||||| || | ||| | Sbjct 992721 AG-TGGATGTTGAGAGATTGTGATTGATCGATGAAGGCTCCTCTGTCCGCTGACATGTCA 992663 Query 62223 ATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGC-TTAATATCTTCTGG 62281 ||||| |||| || || ||||| | ||| ||||| | || ||||| || ||||| Sbjct 992662 ATGATACTCTTCTGACTGATCTCCCATACTGTTCGATAAA-TAGCTTTAATCTCATCTGG 992604 Query 62282 AAGG 62285 ||| Sbjct 992603 TAGG 992600 >seq11 Length=1302298 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 63351 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 || |||||||| | | || ||| | ||||| || || | ||| || || | ||||| Sbjct 896112 AGGTCGAGGAATTCGAAAACATCCGCGTGCCATGGCTCAATGTAGATTGCAAAGGCTCCA 896053 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 || || ||||| ||||| ||||| | ||||| ||||||||| || || |||| || ||| Sbjct 896052 GGTCGCTTGTTGCCTCCTTGATCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATC 895993 Query 63471 GGAATAATACCGTTTGA 63487 || | ||||||||||| Sbjct 895992 GGGACGATACCGTTTGA 895976 Score = 82.4 bits (90), Expect = 1e-10 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| ||||| | | || ||| | ||| || || || |||||||||||||| || ||| Sbjct 897477 GTGAACTGAATAGCACCGACTGCAGCTTTTGTGCGGAGGTAGTACATTCCCGTCTTGAGA 897418 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| |||||||| ||||| || |||| | || | || | | Sbjct 897417 CCTTTCTTCCAGCCGTAAAAGTGCATGGATGTGAGTTGAGCGAAAGTGGGGGATTGGAGG 897358 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 |||||||| | ||||| |||||| || || || || |||||||||| ||| | ||| Sbjct 897357 TGGATATTGAGTGATTGCGATTGATCAATAAACGCGCCTCTGTCTGCAGACATGTCAATG 897298 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || |||| || || ||||| | ||| | || | ||| || || ||||| ||| Sbjct 897297 ATGCTCTTCTGACTGATCTCCCACACTGTTCTGTAGATAGCCTTGATCTCATCTGGTAGG 897238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816387601120