Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 3e-14 seq1 93.3 3e-14 >seq12 Length=1303331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| | |||||| || | ||||||||||| || | |||||| || || Sbjct 512519 CCTCCTCTGAGTCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCTGAA 512460 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || |||| ||||| || ||||| || | || ||||||||| | || Sbjct 512459 AGGGTTCGTCCATCTTCCAGCTGTTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGG 512400 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| ||| ||||| ||| || ||| | |||||| Sbjct 512399 ATACCTTCCTTATCTTGGATCTTGCTC-TTGACAGCATCAATCGTATCGGACGACTCGAC 512341 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || | || || ||||| |||||||| Sbjct 512340 TTCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAGATTTGCAT 512293 >seq1 Length=6229779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||| | ||||| |||| ||||||||||| || | || ||||| || Sbjct 4307432 CCTCCTCTGAGTCTGAGTACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAA 4307373 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || |||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 4307372 AGGGTTCTTCCATCTTCCAGCTGTTTTCCCGCAAAGATCAACCGCTGTTGATCAGGTGGA 4307313 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| ||| ||||| | | ||||| || |||||| Sbjct 4307312 ATACCTTCCTTATCTTGGATCTTGCTC-TTGACAGCATCGATCGTGTCTGAAGACTCGAC 4307254 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || | ||| || || || |||||||| Sbjct 4307253 TTCTAATGTAATTGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 4307206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368884216932