Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq29 192 9e-44 seq35 156 6e-33 seq23 156 6e-33 >seq29 Length=171343 Score = 192 bits (212), Expect = 9e-44 Identities = 337/482 (70%), Gaps = 8/482 (2%) Strand=Plus/Minus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| ||||| ||||| | || ||| | || || || ||||||||| |||| ||||||| Sbjct 54618 AGGCGTCCTTCTGGACCGCAGAGGAGATTGACCTCTCAAAGGACCTGCACGACTGGGAGA 54559 Query 125104 -CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | | | || || || || | || || || ||| | | || ||||| ||| Sbjct 54558 ACAAGCTCAACAAGGAC-GAACGCTACTTCATCTCTCACGTACTCGCATTCTTCGCCTCT 54500 Query 125163 TCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC- 125220 |||| || ||||||||||| || || | ||||||| || | | ||| || Sbjct 54499 GCCGACGGTATCGTCAACGAGAACCTCCTAGAACGATTCAGC--AGCGAAGTCCAAGTCG 54442 Query 125221 CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 |||||| |||||| ||||| ||||| ||||||||||| ||| | ||| | ||| | | Sbjct 54441 CAGAGGCCAGGTGCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCT 54382 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGAT-CCGCAACGTAAACACATGCTCTTTAAC 125339 |||| || || || | ||||| ||||| ||||| | ||||| | || || || Sbjct 54381 ACTCCCTCCTCATCGATACCTACATCCGCGAAACCGCACAGCGAACACGT-CTATTCAAT 54323 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || ||||| ||| |||| | || |||||| |||||| || |||||| Sbjct 54322 GCCATCGAGACGATGCCTGCCATCAAGCGCAAGGCTGAATGGGCAATGACTTGGATCTCA 54263 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 ||| | |||| | | | || ||| |||| ||||||||||| ||||||||||||||| Sbjct 54262 GACAAGCAGTCGTGCTTTGGTGAGAGATTGGTAGCATTCGCCGCTGTAGAGGGCATCTTC 54203 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || ||| ||| || |||||||| |||||||||||||| ||||||||||| || || Sbjct 54202 TTCTCTGGTTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCTGGTCTT 54143 Query 125520 AC 125521 || Sbjct 54142 AC 54141 >seq35 Length=121122 Score = 156 bits (172), Expect = 6e-33 Identities = 349/515 (68%), Gaps = 8/515 (2%) Strand=Plus/Minus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| ||||| ||||| | || ||| |||| || || ||||| || |||| ||||||| Sbjct 14282 AGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTCTCAAAGGATCTCCACGACTGGGAGA 14223 Query 125104 -CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | | | || || || || || || || ||| | | || ||||| || | Sbjct 14222 ACAAGCTCAACAAGGAC-GAACGTTTCTTCATCTCTCACGTACTCGCATTCTTCGCTTCC 14164 Query 125163 TCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC- 125220 ||||||| ||||||||||| || || | |||||| || | | ||| || Sbjct 14163 GCCGATGGTATCGTCAACGAGAACCTCCTAGAGCGATTCAGC--AGCGAAGTCCAGGTCG 14106 Query 125221 CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 | |||| |||||| ||||| ||||| ||||||||||| ||| | ||| | ||| | | Sbjct 14105 CCGAGGCCAGGTGCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCT 14046 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGATCC-GCAACGTAAACACATGCTCTTTAAC 125339 |||| || || || | ||||| ||||| | || | |||| | || || || Sbjct 14045 ACTCCCTCCTCATCGATACATACATCCGCGAAACTGCCCAGAGGACACGT-CTTTTCAAT 13987 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || ||||| ||| |||| | || |||||| |||||| || |||||| Sbjct 13986 GCCATCGAGACGATGCCAGCCATCAAGCGCAAGGCTGAATGGGCAATGACATGGATCTCA 13927 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 ||| | |||| | | | || || |||| || |||||||| ||||||||||||||| Sbjct 13926 GACAAGCAGTCGTGCTTTGGTGAACGATTGGTAGCGTTCGCCGCTGTAGAGGGCATCTTC 13867 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || ||| ||| || |||||||| |||||||||||||| ||||||||||| || || Sbjct 13866 TTCTCTGGTTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCTGGTCTT 13807 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 || | |||||| | || | || || ||||| Sbjct 13806 ACATTCTCCAACGAGCTCATCTGCCGTGATGAGGG 13772 >seq23 Length=274361 Score = 156 bits (172), Expect = 6e-33 Identities = 349/515 (68%), Gaps = 8/515 (2%) Strand=Plus/Minus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| ||||| ||||| | || ||| |||| || || ||||| || |||| ||||||| Sbjct 224113 AGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTCTCAAAGGATCTCCACGACTGGGAGA 224054 Query 125104 -CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | | | || || || || || || || ||| | | || ||||| || | Sbjct 224053 ACAAGCTCAACAAGGAC-GAACGTTTCTTCATCTCTCACGTACTCGCATTCTTCGCTTCC 223995 Query 125163 TCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC- 125220 ||||||| ||||||||||| || || | |||||| || | | ||| || Sbjct 223994 GCCGATGGTATCGTCAACGAGAACCTCCTAGAGCGATTCAGC--AGCGAAGTCCAGGTCG 223937 Query 125221 CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 | |||| |||||| ||||| ||||| ||||||||||| ||| | ||| | ||| | | Sbjct 223936 CCGAGGCCAGGTGCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCT 223877 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGATCC-GCAACGTAAACACATGCTCTTTAAC 125339 |||| || || || | ||||| ||||| | || | |||| | || || || Sbjct 223876 ACTCCCTCCTCATCGATACATACATCCGCGAAACTGCCCAGAGGACACGT-CTTTTCAAT 223818 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || ||||| ||| |||| | || |||||| |||||| || |||||| Sbjct 223817 GCCATCGAGACGATGCCAGCCATCAAGCGCAAGGCTGAATGGGCAATGACATGGATCTCA 223758 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 ||| | |||| | | | || || |||| || |||||||| ||||||||||||||| Sbjct 223757 GACAAGCAGTCGTGCTTTGGTGAACGATTGGTAGCGTTCGCCGCTGTAGAGGGCATCTTC 223698 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || ||| ||| || |||||||| |||||||||||||| ||||||||||| || || Sbjct 223697 TTCTCTGGTTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCTGGTCTT 223638 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 || | |||||| | || | || || ||||| Sbjct 223637 ACATTCTCCAACGAGCTCATCTGCCGTGATGAGGG 223603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057773461040