Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq12 114 3e-20 >seq1 Length=6229779 Score = 116 bits (128), Expect = 9e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || ||||| | || | || || ||||| || ||||| || || Sbjct 4307432 CCTCCTCTGAGTCTGAGTACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAA 4307373 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || ||||| || |||||||| ||||| || | || |||||||||||| || Sbjct 4307372 AGGGTTCTTCCATCTTCCAGCTGTTTTCCCGCAAAGATCAACCGCTGTTGATCAGGTGGA 4307313 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| ||||| || ||| ||||| || ||| || | || || || || || Sbjct 4307312 ATACCTTCCTTATCTTGGATC-TTGCTCTTGACAGCATCGATCGTGTCTGAAGACTCGAC 4307254 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| |||||| ||||| ||||| | || || || || || ||||| Sbjct 4307253 TTCTAATGTAATTGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 4307206 >seq12 Length=1303331 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| ||||| || || |||| || ||||| || ||||| || ||||| Sbjct 512483 TCCTTCTGGATATTGTAGTCTGAAAGGGTTCGTCCATCTTCCAGCTGTTTACCCGCAAAG 512424 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATT 104487 || || |||||||||||||| || || ||||| ||||| || ||| ||||| || ||| Sbjct 512423 ATGAGTCTCTGTTGATCAGGTGGGATACCTTCCTTATCTTGGATC-TTGCTCTTGACAGC 512365 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | |||||| | || || || | ||||| ||||| || || | ||| || || Sbjct 512364 ATCAATCGTATCGGACGACTCGACTTCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGAC 512305 Query 104548 AAATATCTGCAT 104559 ||| || ||||| Sbjct 512304 AAAGATTTGCAT 512293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396128147032