Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 149 1e-31 seq14 132 8e-27 seq5 114 2e-21 seq17 98.7 2e-16 seq25 82.4 1e-11 >seq20 Length=513148 Score = 149 bits (164), Expect = 1e-31 Identities = 170/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | || || ||||| ||||||||||| ||||| |||| Sbjct 212746 CGCCAAGCGACACCGCAAGATCT-TGCGCGACAACATTCAAGGAATCACAAAGCCTGCTA 212688 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| || || | || || ||||||||| ||||||| ||| |||||||||||| Sbjct 212687 TTCGTCGTCTTGCACGAAGAGGAGGTGTCAAGCGTATCTCTGGTTTGATCTATGAAGAGA 212628 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||||||||| | ||| || ||| ||| | || || || | Sbjct 212627 CCCGTGGTGTCCTCAAGATCTTCTTGGAGAATGTCATCAGGGATTCAGTCACTTACACAG 212568 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 | ||||| || | ||||||||||| ||| | ||| | || ||||| Sbjct 212567 AACACGCAAAGAGAAAGACTGTCACTTCCCTCGATGTAGTGTATGC 212522 Score = 89.7 bits (98), Expect = 8e-14 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || || |||| ||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 45694 GCTAAACGACACCGCAAGATCT-TGCGAGACAACATTCAAGGAATCACCAAGCCTGCTAT 45636 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 |||||||| || || | ||||| || || ||| | |||||| | |||| Sbjct 45635 TCGTCGTCTTGCACGAAGAGGTGGTGTGAAACGTATTTCTGGACTCATCTA 45585 >seq14 Length=1183914 Score = 132 bits (146), Expect = 8e-27 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || ||||| |||||||| || ||||| ||||| |||| Sbjct 676024 CGCCAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAGGGTATCACAAAGCCTGCTA 675966 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| | | ||||| ||||||||| | ||||| ||| |||| ||||||| Sbjct 675965 TCCGTCGTCTGGCAAGAAGAGGTGGTGTCAAGCGTATATCTGGTTTGATCTACGAAGAGA 675906 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 |||| |||| | ||||||||||| Sbjct 675905 CCCGTGGTGTTCTCAAGATCTTCCT 675881 Score = 129 bits (142), Expect = 9e-26 Identities = 120/150 (80%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || ||||| |||||||| || ||||| ||||| |||| Sbjct 683673 CGCCAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAGGGTATCACAAAGCCTGCTA 683615 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || | ||||| ||||| ||| | ||||| ||| |||| ||||||| Sbjct 683614 TCCGTCGTCTAGCACGAAGAGGTGGTGTCAAACGTATATCTGGTTTGATCTACGAAGAGA 683555 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 |||| ||| | |||||||||||| ||| Sbjct 683554 CCCGTGGTGTACTCAAGATCTTCCTCGAGA 683525 Score = 102 bits (112), Expect = 1e-17 Identities = 86/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | ||||| ||||||||||||||||||||||| |||| Sbjct 473746 CGCAAAGCGACACCGCAAGATCT-TGCGAGACAACATCCAAGGAATCACCAAGCCTGCTA 473804 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 ||||||||||||| || | || || ||||| ||| | ||||| Sbjct 473805 TCCGTCGTCTGGCGCGAAGAGGAGGTGTCAAACGTATTTCTGG 473847 >seq5 Length=2077020 Score = 114 bits (126), Expect = 2e-21 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| |||||||||||||| || | Sbjct 680746 CGCCAAGCGACACCGCAAGATC-CTGCGCGACAACATCCAGGGAATCACCAAGCCTGCAA 680688 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| | | ||||| ||||||||| || ||| | | || || |||| Sbjct 680687 TCCGTCGTCTGGCAAGAAGAGGTGGTGTCAAGCGTATCAGTGGTCTAATTTACGAGGAGA 680628 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| ||| | |||||||||||| ||| Sbjct 680627 CTCGTGGTGTGCTCAAGATCTTCCTCGAGA 680598 Score = 114 bits (126), Expect = 2e-21 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| |||||||||||||| || | Sbjct 688255 CGCCAAGCGACACCGCAAGATC-CTGCGCGACAACATCCAGGGAATCACCAAGCCTGCAA 688197 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| | | ||||| ||||||||| || ||| | | || || |||| Sbjct 688196 TCCGTCGTCTGGCAAGAAGAGGTGGTGTCAAGCGTATCAGTGGTCTAATTTACGAGGAGA 688137 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| ||| | |||||||||||| ||| Sbjct 688136 CTCGTGGTGTGCTCAAGATCTTCCTCGAGA 688107 Score = 114 bits (126), Expect = 2e-21 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | ||||| |||||||| || ||||||||||| || | Sbjct 1282861 CGCCAAGCGACACCGCAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCTGCAA 1282919 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || | | ||||| ||||||||| || ||| | | ||||| |||| Sbjct 1282920 TCCGTCGTCTAGCAAGAAGAGGTGGTGTCAAGCGTATCAGTGGTCTAATTTATGAGGAGA 1282979 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 ||||| ||| | |||||||||||| ||| Sbjct 1282980 CTCGTGGTGTGCTCAAGATCTTCCTCGAGA 1283009 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/111 (81%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | || |||| ||||| | |||| ||||||||||||||||||||||| || || Sbjct 478942 GCGAAGAGACACCGCAAGATCT-TGAGAGACAACATCCAAGGAATCACCAAGCCTGCAAT 479000 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 ||||||||| || || | ||||| ||||||||| |||| || ||| |||| Sbjct 479001 CCGTCGTCTTGCACGAAGAGGTGGTGTCAAGCGTATCTCGGGCTTGATCTA 479051 >seq17 Length=645479 Score = 98.7 bits (108), Expect = 2e-16 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | || || |||||||| || ||||||||||| |||| Sbjct 492279 CGCCAAGCGACACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCTGCTA 492221 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 | |||||||||||||| | ||||| ||||||||| | ||||| Sbjct 492220 TTCGTCGTCTGGCTCGAAGAGGTGGTGTCAAGCGTATTTCTGG 492178 >seq25 Length=259181 Score = 82.4 bits (90), Expect = 1e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || || |||| ||||| | || || || ||||| ||||| || ||||| |||| Sbjct 192909 CGCCAAACGACACCGCAAGATCT-TGCGCGACAATATCCAGGGAATTACAAAGCCTGCTA 192851 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 |||||||||| || || | ||||| || |||||| ||||||| || |||| Sbjct 192850 TCCGTCGTCTTGCACGCAGAGGTGGTGTAAAGCGTATCTCTGGTCTGATCTA 192799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075059196722