Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14 100 2e-16 seq5 96.9 2e-15 >seq14 Length=1183914 Score = 100 bits (110), Expect = 2e-16 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292 ||| || ||||| |||||||||||||| || || |||||| |||||| || |||| Sbjct 324022 CAAAGTAGAGGGAAAGGGAAACGGTATCAAGACAGTCATTCCTAACATGGTCGACATCGC 323963 Query 6293 TAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 || ||||||| || || | || ||||| || |||| ||||| ||||| || || || Sbjct 323962 CAAAGCGCTCGCCCGACCGCCTACGTACCCTACCAAATTCTTCGGCTGCGAGCTCGGTGC 323903 Query 6353 TCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC 6412 || || ||||| | || |||||||| | |||||| ||||| | || | | | Sbjct 323902 CCAAACTACATTTGACGAGAAGAACGAGCGATACATCGTCAACGGTGCTCACGATGCGAC 323843 Query 6413 CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGA 6472 || |||| || | ||| || |||||| || || || || || | | | ||| | Sbjct 323842 CAGACTGCGCGAGCTCCTTACCGTCTTTATCGATAAATTCGTACTCTGCCCGAATTGCAA 323783 Query 6473 TAACCCGGAGACCGAGCT 6490 ||||| || || || || Sbjct 323782 GAACCCTGAAACGGACCT 323765 >seq5 Length=2077020 Score = 96.9 bits (106), Expect = 2e-15 Identities = 193/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 6209 CTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACC 6266 ||||| |||||| | | ||| | ||| || ||||| || ||||||||||| || || Sbjct 330294 CTACAGAATGCCTC--AGTTGCAGGTCAAAGTAGAGGGCAAAGGAAACGGTATCAAGACA 330237 Query 6267 GTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACG 6326 |||||| ||||||| || |||| || ||||||| || || | || ||||| || Sbjct 330236 GTCATTCCCAACATGGTCGACATCGCCAAAGCGCTCGCCCGACCGCCTACGTACCCTACC 330177 Query 6327 AAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTC 6386 |||| || || ||||| || || || || || ||||| | || |||||||| | | Sbjct 330176 AAATTCTTTGGCTGCGAGCTCGGTGCCCAAACTACATTTGACGAGAAGAACGAGCGATAC 330117 Query 6387 ATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGC 6446 ||||| ||||| | || | | ||| |||| || | || || |||||| Sbjct 330116 ATCGTCAACGGCGCACACGATGCGACCAGACTGCGCGAGCTTCTCACCGTCTTTATCGAT 330057 Query 6447 AAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || || ||||| || | | ||| | ||||| ||||| || || Sbjct 330056 AAATTCGTGCTCTGCCCCGGCTGCAAGAACCCAGAGACGGATCT 330013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946571345974