Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq29 96.9 7e-15 seq18 93.3 9e-14 seq11 91.5 3e-13 >seq29 Length=171343 Score = 96.9 bits (106), Expect = 7e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||| |||| || || | ||||||||||||||| ||||| | | ||||| ||||| Sbjct 53757 CTTGCCCGCCAGCGAAATCATCTCCATGAAGTCGAATGGGTTCGCCGAGTTGTAGTGCTT 53816 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 || || |||||||| | | | |||||| |||||||| | ||||| | |||| | Sbjct 53817 CTCATTACCCAGTGCTACTAGTAGTCTGTCTGCTACAAACTCGATGTACTGGCACATCTG 53876 Query 251697 TTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCG 251754 || | ||||||||| || | || || | || || ||| ||| ||||||||| Sbjct 53877 CTCTGCGTTCATGCCGATGAGGCGGACGGGGAGGGCATCGGAGAGGAACTCCTTTTCG 53934 >seq18 Length=640361 Score = 93.3 bits (102), Expect = 9e-14 Identities = 345/540 (64%), Gaps = 8/540 (1%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||||||| |||| || || ||||| |||||| | ||| || || ||||| Sbjct 297808 GACTTCATCAACAAAGAACTTATTCTCTTCTCGATGGCCGATAACTTACGATCCATTCCT 297749 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || || || ||| ||||||| |||||||| | || || | |||||| | Sbjct 297748 TCTGTTGTCGACGGCTTCAAGCCTGGTCAGCGTAAAGTACTGTTCGGATGCTTCAAGAAG 297689 Query 218638 AACCTGGTTCAAG----AAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| | |||| |||| |||||| ||| | |||||| | ||| Sbjct 297688 AACAT----CAAGGCGGAAATCAAGGTCTTCCAGCTCGTCGGTTATATCGGTGAACAGAG 297633 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 || ||||||||||| || || ||| || |||| || || | || ||| | | Sbjct 297632 TGCTTACCATCACGGAGAACAATCTCTAGCCGGCACCATCGTCGGTCTAGCTCAGCAATT 297573 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 || || | ||||||| ||||| | || ||||| ||||||||||| ||| ||||||| Sbjct 297572 CGTAGGAAATAACAACTTGAACCTTCTTCTCCCGAACGGTCAGTTCGGTACTCGTCTTCA 297513 Query 218814 GGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 ||||| || ||| ||| || ||||||||||||| || ||| | || | || | Sbjct 297512 AGGTGGTAAAGATCATGCCTCGCCCAGGTATATCTTCACTGCATTGGCTCCAATCACAAG 297453 Query 218874 CCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTC 218933 || ||||| ||| || || | | || | || || | || ||||| Sbjct 297452 AACAGTCTTCAACAAGGAGGACGACGCTGTTCTCACCTACCTCAACGATGATGGACAGAG 297393 Query 218934 GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGG 218993 ||||| || | ||||| ||||| || || | |||| || ||||| | | || Sbjct 297392 CATTGAACCAAATTGGTACATGCCTATCATGCCTATGGTGCTTGTCAATGGATCAGACGG 297333 Query 218994 TATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGACAA 219053 |||||| || || | ||| ||| ||||| |||||||| |||||| ||| ||| Sbjct 297332 TATCGGTACCGGCTGGAGTTCTGCTATTCCCAACTACAATCCTGCAGACATCGTTGCCAA 297273 >seq11 Length=1302298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || || || |||||||||||||| || || | || ||||| || | Sbjct 398072 GGATCGCTCTCTGGAGGATGGAAGATGAAGCTTGCTCTTGCACGAGCCATCCTCTTCAAG 398131 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || ||| |||| |||| || ||||| ||||||||| ||||| | |||||| | ||| Sbjct 398132 GCTGATATCCTCTTGCTCGACGAGCCCACCAACCACTTGGACGTCCTCAACGTCACGTGG 398191 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || || |||||| ||| || | |||| | ||| |||| |||||||||||||| Sbjct 398192 CTCGTCAACTACCTCACCTCCCTCACTCAATG-CACATCCATCATCGTCTCTCACGACTC 398250 Query 279878 TGGCTTCCT 279886 || ||||| Sbjct 398251 TGAGTTCCT 398259 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || ||||| || |||||| || || | |||||||||||||||||||||||||||||| Sbjct 398627 GTCTGGAAACACCCCAACTTGGTCATTGGATACGTCGCTCAGCACGCTTTCCACCACATC 398686 Query 280311 GAGAACCACCTGGACATGACTCCT 280334 || | ||||| |||| ||||||| Sbjct 398687 GATCATCACCTCGACAAGACTCCT 398710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834771949514