Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 seq29 116 7e-21 seq35 107 4e-18 seq23 107 4e-18 seq20 105 1e-17 seq21 100 5e-16 seq17 86.0 1e-11 >seq1 Length=6229779 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| |||||| ||| || |||||||||||||| || || || || |||||||| Sbjct 4307415 TACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGGGTTCTTCCATCTTC 4307356 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || || || || || | | ||||| || |||||||| |||||||| ||||| Sbjct 4307355 CAGCTGTTTTCCCGCAAAGATCAACCGCTGTTGATCAGGTGGAATACCTTCCTTATCTTG 4307296 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| |||||| || ||||| ||||||| || || ||||| || || || || || Sbjct 4307295 GATCTTGCTCTTGACAGCATCGATCGTGTCTGAAGACTCGACTTCTAATGTAATTGTCTT 4307236 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||||||||| || ||||| Sbjct 4307235 GCCAGTCAAAGTCTTGACGAAGATTTGCAT 4307206 Score = 116 bits (128), Expect = 7e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| || |||||||| |||||||| | ||||||||| || || || || | Sbjct 4307037 TCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGGCATCAATAGTATCGGAA 4306978 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || | ||||||||| ||||| || |||||||||||||| ||||||||| Sbjct 4306977 GACTCTACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATT 4306921 Score = 111 bits (122), Expect = 3e-19 Identities = 208/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 176223 GTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGA 176282 ||| |||| | ||| |||||||||||||||| ||| ||| || ||||| || ||| Sbjct 5371006 GTGATGGGCGCCAGAGCAGTGAAGATATACCTAGGAGATGCATGATCTTTGCCACCTTGA 5370947 Query 176283 AGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAG 176342 || |||| ||||||||| ||| ||||| || | |||| ||| || || ||| | Sbjct 5370946 AGTCGGGTACCGAATTGACCGTTCGGAAGGAGAAGGTTGAGGTTGTTGTTTCCGACGAAC 5370887 Query 176343 TCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCG 176402 | || |||| ||||| || | || ||||||| || |||||||| || | | Sbjct 5370886 TGCTGTGCCAGACCGACAATAGTACCAGCGAGAGACTGTTCACCGTGGTGGTATGCACTG 5370827 Query 176403 TTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTC 176462 | ||| | |||||||| ||| ||| ||| |||||||| || ||| ||| Sbjct 5370826 TGCTCTCCAATGTATCCGACAAGCTGGAAGACCTTGATTTCGGCCTTGATGTTCTTCTTG 5370767 Query 176463 AACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATG 176522 || ||||| | || ||||| |||||| | ||||||||||| || |||||| Sbjct 5370766 AAGCATCCGAACAAGACTTTGCGCTGACCGGGCTTGAAGCCATCGACGACGGAAGGAATG 5370707 Query 176523 GAACGC 176528 || ||| Sbjct 5370706 GATCGC 5370701 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||||| || |||||||| | | || ||| | |||| Sbjct 482572 AGGAACTCAGAGTCGTGGGAGACGATGATGGATGTGCATTGAGTGAGGGAAGTAAGGTAG 482513 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 ||| |||||| | || ||| ||||||| |||||| ||||| || || || || ||| Sbjct 482512 TTGACGAGCCAAGTGACATTGAGAACGTCCAAGTGGTTGGTAGGCTCATCGAGGAGGAGG 482453 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 || ||||| | | |||||| || || | |||| |||||||| ||||| || ||||| Sbjct 482452 ATATCAGCCTTGAAGAGGATAGCTCGTGCAAGAGCAAGCTTCATCTTCCATCCACCGGAG 482393 Query 225629 AGGGAGCCGAT 225639 ||||| ||||| Sbjct 482392 AGGGATCCGAT 482382 >seq29 Length=171343 Score = 116 bits (128), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 9980 GTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAA 10039 ||||| ||||||| | || ||||| | |||||||||||| || |||||| | | | | Sbjct 53751 GTTGGTCTTGCCCGCCAGCGAAATCATCTCCATGAAGTCGAATGGGTTCGCCGAGTTGTA 53810 Query 10040 CTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCT 10099 ||||| | ||| |||||| | | | ||| || || |||||||||||||||| Sbjct 53811 GTGCTTCTCATTACCCAGTGCTACTAGTAGTCTGTCTGCTACAAACTCGATGTACTGGCA 53870 Query 10100 CATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTT 10159 |||| | || | ||||||||| || | |||| ||||| ||| ||| | | ||| ||||| Sbjct 53871 CATCTGCTCTGCGTTCATGCCGATGAGGCGGACGGGGAGGGCATCGGAGAGGAACTCCTT 53930 Query 10160 TTCGTTGGCGACCGCTT 10176 |||| | |||| |||| Sbjct 53931 TTCGATCTCGACGGCTT 53947 >seq35 Length=121122 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 9980 GTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAA 10039 ||| | ||||||| |||| ||||| | |||||| ||||| || ||||| | || | Sbjct 13414 GTTTGTCTTGCCCGCGAGCGAAATCATCTCCATAAAGTCGAATGGGTTTGTAGAACCGTA 13473 Query 10040 CTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCT 10099 ||||| || ||| |||||| | | | || || |||||||||||||| |||| Sbjct 13474 GTGCTTCTCGTTACCCAGTGCTACTAGTAGTCTATCTGCTACGAACTCGATGTATTGGCA 13533 Query 10100 CATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTT 10159 |||| | || | |||||||||||| | |||| ||| | ||||||| | | ||| ||||| Sbjct 13534 CATCTGCTCTGCGTTCATGCCAATGAGGCGGACGGGAAGGGCGTCGGACAGGAACTCCTT 13593 Query 10160 TTCGTTGGCGACCGCTT 10176 ||| | |||| |||| Sbjct 13594 CTCGATCTCGACGGCTT 13610 >seq23 Length=274361 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 9980 GTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAA 10039 ||| | ||||||| |||| ||||| | |||||| ||||| || ||||| | || | Sbjct 223245 GTTTGTCTTGCCCGCGAGCGAAATCATCTCCATAAAGTCGAATGGGTTTGTAGAACCGTA 223304 Query 10040 CTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCT 10099 ||||| || ||| |||||| | | | || || |||||||||||||| |||| Sbjct 223305 GTGCTTCTCGTTACCCAGTGCTACTAGTAGTCTATCTGCTACGAACTCGATGTATTGGCA 223364 Query 10100 CATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTT 10159 |||| | || | |||||||||||| | |||| ||| | ||||||| | | ||| ||||| Sbjct 223365 CATCTGCTCTGCGTTCATGCCAATGAGGCGGACGGGAAGGGCGTCGGACAGGAACTCCTT 223424 Query 10160 TTCGTTGGCGACCGCTT 10176 ||| | |||| |||| Sbjct 223425 CTCGATCTCGACGGCTT 223441 >seq20 Length=513148 Score = 105 bits (116), Expect = 1e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 268421 AGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 ||||| || || ||||| ||||||||| | || || || ||| ||| ||||| | Sbjct 349680 AGGATACCATTTGACGCGTGCATGCCATACGATTCTCGATAATTCTTGACTATCCAGAAC 349621 Query 268481 GCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGA 268540 || | | |||||| || | || || ||||| || | ||| ||||| || |||| Sbjct 349620 CCATAAAGCTTTGCTACACCATATGGTGAACGCGGGTAGAAAGGCGTTGTCTCGGATTGA 349561 Query 268541 GGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTT 268600 || | || | ||||| ||| | ||||| || || |||||||||||||| | | Sbjct 349560 GGAACCTCCTGTACTTTTCCATACAGCTCAGAAGTAGATGCTTGGTAGAAGCGGATATGT 349501 Query 268601 TTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACG 268660 | | |||||||| | | ||| || || |||||||| || ||||||| |||||| ||| Sbjct 349500 CTGGCTAGACCGCATGTCCTGATAGCATCCAGCAAACGCAGCGTTCCCAGGCCATCGACG 349441 Query 268661 TC-CGCTGTA 268669 || | ||||| Sbjct 349440 TCGCCCTGTA 349431 >seq21 Length=442779 Score = 100 bits (110), Expect = 5e-16 Identities = 178/258 (69%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 268419 AGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGT 268478 |||||||||| || | ||| |||||| || | ||| || || ||| ||| |||||| Sbjct 186479 AGAGGATGCCATTTGAGGCGTGCATGCCGTAAGACTCGCGATAATTCTTGACTATCCAGT 186538 Query 268479 ATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTT 268538 | || | | ||| || || | || || ||||| || | |||||| || || || Sbjct 186539 AGCCATAAAGCTTAGCTACGCCATAAGGTGAACGAGGGTAGAAGGGTGTTGTCTCGGATT 186598 Query 268539 GAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGA----ACTTT 268594 |||| | ||| | ||||| ||| | |||||||| || ||||||||||||| | | | Sbjct 186599 GAGGTACTTCCTGTACTTTTCCATATAGCTCGGATGTAGATGCTTGGTAGAAGCGAATAT 186658 Query 268595 GTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCA 268654 | | | |||||||| | | ||| || || ||||| || ||||| || | ||| Sbjct 186659 GGCG----GGCAAGACCGCATGTCCTGATAGCATCTAGCAAGCGCAGAGTGCCTAGTCCA 186714 Query 268655 TCCACGTC-CGCTGTATA 268671 || ||||| | ||||||| Sbjct 186715 TCAACGTCGCCCTGTATA 186732 >seq17 Length=645479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| | || ||||| || |||||||| || |||||| Sbjct 176629 CCACCTCGTAGACGGAGTACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 176688 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| ||||| | ||||||||||| || Sbjct 176689 AGGGTTCGTCCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 176748 Query 68355 AT 68356 || Sbjct 176749 AT 176750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620625876880