Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq29 188 1e-42 seq35 165 2e-35 seq23 165 2e-35 seq11 104 4e-17 >seq29 Length=171343 Score = 188 bits (208), Expect = 1e-42 Identities = 353/507 (70%), Gaps = 15/507 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTG 42393 ||||||||| |||||||||||||| | |||||| | || ||||||| || || Sbjct 54608 CTGGACCGCAGAGGAGATTGACCTCTCAAAGGACCTGCACGACTGGGAGAACAAGCTCAA 54549 Query 42394 --AGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCAT 42451 || ||||| | ||| || || |||| || ||||||||| | | ||||| || Sbjct 54548 CAAGGACGAACGCTACTTCATCTCTCACGTACTCGCATTCTTCGCCTCTGCCGACGGTAT 54489 Query 42452 AGTCAATGAGAACCTGGCCACCAGG-TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 ||||| |||||||| | | | | |||| | || || || | ||||| | | Sbjct 54488 CGTCAACGAGAACCTC-CTAGAACGATTCAGCAGCGAAGTCCAAGTCGCAGAGGCCAGGT 54430 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| || || ||| | ||| | || || ||| || || Sbjct 54429 GCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCTACTCCCTCCTCA 54370 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || | || ||||||| || ||| |||| | | || ||||| ||||| ||||||| Sbjct 54369 TCGATACCTACATCCGCGAAACCGCACAGCGAACACGTCTATTCAATGCCATCGAGACGA 54310 Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA 42690 |||| ||||||| ||||| || ||||| | | |||||| || | | ||| Sbjct 54309 TGCCTGCCATCAAGCGCAAGGCTGAATGGGCAATGACTTGGATCTC-AGAC---AAGCAG 54254 Query 42691 -CGTTC---GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGC 42746 ||| | || ||||| ||||||| || |||| || ||||||||||||||||| || Sbjct 54253 TCGTGCTTTGGTGAGAGATTGGTAGCATTCGCCGCTGTAGAGGGCATCTTCTTCTCTGGT 54194 Query 42747 GCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTC 42805 | |||||| ||||||||||||||||| || || || ||||| || || |||||||| Sbjct 54193 TCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTC-ATGCCTGGTCTTACCTTCTC 54135 Query 42806 GAACGAACTCATCAGCAGGGACGAGGG 42832 || || |||||| || | || ||||| Sbjct 54134 CAATGAGCTCATCTGCCGTGATGAGGG 54108 Score = 102 bits (112), Expect = 2e-16 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 42921 GCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATG 42980 ||||| |||||||| |||||||||||| | | | || ||||| ||| |||||||| Sbjct 53945 GCCGTCGAGATCGAAAAGGAGTTCCTCTCCGATGCCCTCCCCGTCCGCCTCATCGGCATG 53886 Query 42981 AACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGAT 43039 ||| || | |||||| |||||||| ||| || || ||| || || || || | Sbjct 53885 AACGCAGAGCAGATGTGCCAGTACATCGAGTTTGTAGCAGACAGACTACTAGTAGCA-CT 53827 Query 43040 GGGT-CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGT 43098 |||| | || | | ||||||| || || ||| |||||||| ||||||| || ||| Sbjct 53826 GGGTAATGAGAAG-CACTACAACTCGGCGAACCCATTCGACTTCATGGAGATGATTTCGC 53768 Query 43099 TGGAGGGCAAGACCAAC 43115 ||| ||||||||||||| Sbjct 53767 TGGCGGGCAAGACCAAC 53751 >seq35 Length=121122 Score = 165 bits (182), Expect = 2e-35 Identities = 348/508 (69%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTG 42393 ||||||||| |||||||| ||||| | ||||| || ||||||| || || Sbjct 14272 CTGGACCGCAGAGGAGATCGACCTCTCAAAGGATCTCCACGACTGGGAGAACAAGCTCAA 14213 Query 42394 --AGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCAT 42451 || ||||| || ||| || || |||| || |||||||| || | || || || Sbjct 14212 CAAGGACGAACGTTTCTTCATCTCTCACGTACTCGCATTCTTCGCTTCCGCCGATGGTAT 14153 Query 42452 AGTCAATGAGAACCTGGCCACCAGG--TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGC 42509 ||||| |||||||| || || |||| | || || ||| | ||||| | Sbjct 14152 CGTCAACGAGAACCT--CCTAGAGCGATTCAGCAGCGAAGTCCAGGTCGCCGAGGCCAGG 14095 Query 42510 TGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTG 42569 |||||||||||||||||||| || || ||| | ||| | || || ||| || || Sbjct 14094 TGCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCTACTCCCTCCTC 14035 Query 42570 CTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629 || | || ||||||| || | | | || | | | || ||||| ||||| |||||| Sbjct 14034 ATCGATACATACATCCGCGAAACTGCCCAGAGGACACGTCTTTTCAATGCCATCGAGACG 13975 Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCA 42689 ||||| ||||||| ||||| || ||||| | | |||||| || | | ||| Sbjct 13974 ATGCCAGCCATCAAGCGCAAGGCTGAATGGGCAATGACATGGATCTC-AGAC---AAGCA 13919 Query 42690 A-CGTTC---GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 ||| | || || | ||||||| || |||| || ||||||||||||||||| || Sbjct 13918 GTCGTGCTTTGGTGAACGATTGGTAGCGTTCGCCGCTGTAGAGGGCATCTTCTTCTCTGG 13859 Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCT 42804 | |||||| ||||||||||||||||| || || || ||||| || || || |||| Sbjct 13858 TTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTC-ATGCCTGGTCTTACATTCT 13800 Query 42805 CGAACGAACTCATCAGCAGGGACGAGGG 42832 | ||||| |||||| || | || ||||| Sbjct 13799 CCAACGAGCTCATCTGCCGTGATGAGGG 13772 >seq23 Length=274361 Score = 165 bits (182), Expect = 2e-35 Identities = 348/508 (69%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTG 42393 ||||||||| |||||||| ||||| | ||||| || ||||||| || || Sbjct 224103 CTGGACCGCAGAGGAGATCGACCTCTCAAAGGATCTCCACGACTGGGAGAACAAGCTCAA 224044 Query 42394 --AGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCAT 42451 || ||||| || ||| || || |||| || |||||||| || | || || || Sbjct 224043 CAAGGACGAACGTTTCTTCATCTCTCACGTACTCGCATTCTTCGCTTCCGCCGATGGTAT 223984 Query 42452 AGTCAATGAGAACCTGGCCACCAGG--TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGC 42509 ||||| |||||||| || || |||| | || || ||| | ||||| | Sbjct 223983 CGTCAACGAGAACCT--CCTAGAGCGATTCAGCAGCGAAGTCCAGGTCGCCGAGGCCAGG 223926 Query 42510 TGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTG 42569 |||||||||||||||||||| || || ||| | ||| | || || ||| || || Sbjct 223925 TGCTTCTACGGCTTCCAGATCATGATTGAAAACATCCACGCAGAAGTCTACTCCCTCCTC 223866 Query 42570 CTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACG 42629 || | || ||||||| || | | | || | | | || ||||| ||||| |||||| Sbjct 223865 ATCGATACATACATCCGCGAAACTGCCCAGAGGACACGTCTTTTCAATGCCATCGAGACG 223806 Query 42630 ATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCA 42689 ||||| ||||||| ||||| || ||||| | | |||||| || | | ||| Sbjct 223805 ATGCCAGCCATCAAGCGCAAGGCTGAATGGGCAATGACATGGATCTC-AGAC---AAGCA 223750 Query 42690 A-CGTTC---GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 ||| | || || | ||||||| || |||| || ||||||||||||||||| || Sbjct 223749 GTCGTGCTTTGGTGAACGATTGGTAGCGTTCGCCGCTGTAGAGGGCATCTTCTTCTCTGG 223690 Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCT 42804 | |||||| ||||||||||||||||| || || || ||||| || || || |||| Sbjct 223689 TTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGACTC-ATGCCTGGTCTTACATTCT 223631 Query 42805 CGAACGAACTCATCAGCAGGGACGAGGG 42832 | ||||| |||||| || | || ||||| Sbjct 223630 CCAACGAGCTCATCTGCCGTGATGAGGG 223603 >seq11 Length=1302298 Score = 104 bits (114), Expect = 4e-17 Identities = 264/400 (66%), Gaps = 20/400 (5%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG-CGGGCCTTGCC 244449 ||||| || |||| |||||||||||||||||| |||||||| |||| || || | Sbjct 896847 TCGAGAGCAGCGTGGTAGATGGTCTCGAAGATGTCCTTGTTCA-GTCGTCGAGCATCAGG 896789 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 || | ||| || |||| | |||||| | || || || || ||||| ||||| || Sbjct 896788 GCTGTCGAAAGGCATGCGAAGAGCCATGAAAGCATCTGCAAGACCTTGCACACCGATTCC 896729 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 |||||| | || || ||||||| ||| || ||||||||||||||| |||| Sbjct 896728 GATGGGGCGATGACGGAAGTTGGAGTTTTGGGCCTCCTTAACGGGGTAAAAGTTGACGTC 896669 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 ||| ||||| || | ||| || | || | | ||||||| |||| ||| || | Sbjct 896668 GATGACCTTATTCAAGTTTCGTGCGACTACTTTGGTGACGTCGTGCAGCTTCTGGAAATT 896609 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 |||| | | |||| | || ||| | | || |||| || Sbjct 896608 GTACACACCG---TCCTTGATGAAGGT-------AGGA--------AGAGCGATAGAAGC 896567 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 || |||||||||||| ||||| || | | | ||||| || ||||| ||||| | ||| Sbjct 896566 CAAGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCAGTGCACAAGTT 896507 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | |||||| || || |||| || |||||| |||| Sbjct 896506 GGAGTTCTTGATTGTTCCGAGGTTCTTCTGATTGCTCTTG 896467 Score = 89.7 bits (98), Expect = 1e-12 Identities = 286/436 (66%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 ||| |||||||| ||||||||||| || ||||| ||| || |||| | | Sbjct 896401 GGCATCCTTGTACAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCCTCGAGAATAGCATA 896342 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTC--CTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 |||||| | | |||||||| ||| || | || | || || |||||| | Sbjct 896341 CCAGAGTTTCTGGGCCTTGACAGTCTTCTTTGCGCGT--CCTTCCTTCTCGTACTTCAAG 896284 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG-GCACGACGCCGGGCA 244974 |||| | |||||||| || | || |||| |||| || || | || ||||| Sbjct 896283 AACAGCTCATCGAACTCCTCTCCGTAAACTTCGTGTAGGTTTGGTGCTTCA-GCTGGGCA 896225 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCC-TCTGCATGAAGAGGTCGGGGATCCAGA 245033 | ||| ||| || || |||| || | ||| |||||| | |||||||||||||| Sbjct 896224 GAAGAGGGGCCAATCACCATTTTCCTCTACACGTCT-CATGAACATGTCGGGGATCCAGA 896166 Query 245034 GGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 | || | ||||||||| | | | | || || || |||||| | || || | Sbjct 896165 GAGCGTAGAAGAGGTCGCGAGCGCGCACTTCTTCTTTACCGTGGTTCTTACGGAGGTCGA 896106 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || || || || || ||||||| ||||| ||||||| || | ||| || || |||| Sbjct 896105 GGAATTCGAAAACATCCGCGTGCCATGGCTCAATGTAGATTGCAAAGGCTCCAGGTCGCT 896046 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGC 245209 |||||||||| || || | | | ||||||| |||| ||| ||||| | || Sbjct 896045 TGTTGCCTCCTTGATCGA----CGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATCGGG 895990 Query 245210 ACTATGCCGTTAGAGT 245225 || || ||||| |||| Sbjct 895989 ACGATACCGTTTGAGT 895974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337382147040