Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 seq17 82.4 9e-11 seq5 82.4 9e-11 >seq12 Length=1303331 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | | ||||| |||| || |||||||| |||||||||||||| || Sbjct 512519 CCTCCTCTGAGTCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCTGAA 512460 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| || || || || || | | ||| || || | || Sbjct 512459 AGGGTTCGTCCATCTTCCAGCTGTTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGG 512400 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || |||||| |||||| | | | ||| ||| ||| || || Sbjct 512399 ATACCTTCCTTATCTTGGATCTTGCTCTTGACAGCATCAATCGTATCGGACGACTCGACT 512340 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || |||| || || |||||||||||||| Sbjct 512339 TCCAAAGTAATGGTCTTTCCTGTCAATGTCTTGACAAAGATTTGCAT 512293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||| ||| | |||| ||||| ||| |||||| || |||||||||||| Sbjct 512007 CCTCCTCTTAGACGAAGGACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAGTCGCTG 511948 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 || || || |||| |||||||| ||||||||||| || | || || ||| Sbjct 511947 AGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGACGTTGTTGG 511897 >seq17 Length=645479 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| || ||| | |||| ||||| ||| |||||| ||||| ||||||||||| Sbjct 176629 CCACCTCGTAGACGGAGTACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 176688 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || || | || |||||||| || || ||||| || | ||||| ||||||| Sbjct 176689 AGGGTTCGTCCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGG 176743 >seq5 Length=2077020 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| ||||| ||| |||||| |||||||||||||| || Sbjct 1583336 CCACCTCGAAGACGGAGCACCAAGTGCAAGGTAGACTCCTTCTGGATATTGTAGTCTGAC 1583277 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 | || || | || |||||||| ||||| ||||| || | ||||| ||||||| Sbjct 1583276 AAGGTTCGTCCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGCTGTTGGTCGG 1583222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237311916080