Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq29 100 3e-16 seq35 95.1 1e-14 seq23 95.1 1e-14 >seq1 Length=6229779 Score = 105 bits (116), Expect = 8e-18 Identities = 300/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 167351 AACTGAAACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCA 167410 |||| | |||||||| ||||| || | ||||| ||||||||||| ||||| | |||| Sbjct 5371149 AACTCCATCCCGTACCGATACCGTCTGATCCGTTCACCAAAACCATAGGTAGGATAGGCA 5371090 Query 167411 TGTAAAAGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCAT 167470 |||| | | || |||||| |||||||||| | || |||| | | ||| ||||||| Sbjct 5371089 TGTACCAATTCGGCTCAATGCTCTGACCATCATCGTTCAGGTAGGTCAAAATAGCATCAT 5371030 Query 167471 CTTTGGGATCGAAGAGCTTTCGAGCCTCCTTG--GTAAGCTTCGTAAAGATGTACCTCGT 167528 ||| || ||||| ||| | | | | | || || ||||| ||||| | Sbjct 5371029 CTTCTCTATGGAAGACTGTTCTTG--TGATGGGCGCCAGAGCAGTGAAGATATACCTAG- 5370973 Query 167529 CTGAGACGC---ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAG 167585 |||| || ||| |||||||| || || ||||| |||||||| || ||| Sbjct 5370972 --GAGATGCATGATCTTTGCCACCTTGAAGTCGGGTACCGAATTGACCGTTCGGAAGGAG 5370915 Query 167586 AAGATTGATGTTATTCGACCCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGA 167644 ||| |||| ||| || | ||| || | || |||| ||| || || |||||| Sbjct 5370914 AAGGTTGAGGTTGTT-GTTTCCGACGAACTGCTGTGCCAGACCGACAATAGTACCAGCGA 5370856 Query 167645 GGGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAA 167704 | || ||| ||||||||||| ||||| | || | | ||| | | | ||| | Sbjct 5370855 GAGACTGTTCACCGTGGTGGTATGCACTGTGCTCTCCAATGTATCCGACAAGCTGGAAGA 5370796 Query 167705 CCTTCATCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAG 167764 |||| || || | |||| ||||| | ||| ||| ||| || ||||| ||| | Sbjct 5370795 CCTTGATTTCGGCCTTGATGTTCTTCTTGAAGCATCCGAACAAGACTTTGCGCTGACCGG 5370736 Query 167765 GTTTGAGACCATCTGCCACGTGAGCAATTGAGCGC 167799 | |||| ||||| | ||| || ||| || ||| Sbjct 5370735 GCTTGAAGCCATCGACGACGGAAGGAATGGATCGC 5370701 >seq29 Length=171343 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||||||||||| |||| ||| |||||||||||||| | ||| Sbjct 54108 CCCTCATCACGGCAGATGAGCTCATTGGAGAAGGTAAGACCAGGCATGAGTCCACGCTTC 54167 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| |||||||| ||| ||||| |||||||||||||| ||| |||||| Sbjct 54168 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAT 54227 Query 119634 GCGAATAGACGCTCAGCAAA 119653 || | | | |||| |||| Sbjct 54228 GCTACCAATCTCTCACCAAA 54247 >seq35 Length=121122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || |||||||||| || ||| ||| |||||||||||||| | ||| Sbjct 13772 CCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTTC 13831 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| |||||||| ||| ||||| |||||||||||||| ||| |||||| Sbjct 13832 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAC 13891 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAGAGCCCAGTT 119689 || | | || ||| | |||| ||| |||||| || ||| | | ||||| | Sbjct 13892 GCTACCAATCGTTCA-CCAAAGCACGACTGCTTGTCTGAGATCCATGTCATTGCCCATTC 13950 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| |||| ||| || | || | |||||| | |||||| Sbjct 13951 AGCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAG 13995 >seq23 Length=274361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || |||||||||| || ||| ||| |||||||||||||| | ||| Sbjct 223603 CCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTTC 223662 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| |||||||| ||| ||||| |||||||||||||| ||| |||||| Sbjct 223663 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAC 223722 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAGAGCCCAGTT 119689 || | | || ||| | |||| ||| |||||| || ||| | | ||||| | Sbjct 223723 GCTACCAATCGTTCA-CCAAAGCACGACTGCTTGTCTGAGATCCATGTCATTGCCCATTC 223781 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| |||| ||| || | || | |||||| | |||||| Sbjct 223782 AGCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAG 223826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974866221200