Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq35 131 3e-24 seq23 131 3e-24 seq29 127 3e-23 seq3 100 5e-15 seq12 89.7 8e-12 >seq35 Length=121122 Score = 131 bits (144), Expect = 3e-24 Identities = 232/332 (70%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||| || || || | ||| | |||||| || || || |||||||| || |||| Sbjct 13770 CACCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCT 13829 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||| |||||||| |||| || ||||| ||||||||||| || ||||| | Sbjct 13830 TCTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGA 13889 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-TGT-TGATCCACTTCATCGC 794516 | | || | || || |||| || | | ||| | | |||||| |||| || Sbjct 13890 ACGCTACCAATCGTTCACCAAA-----GCACGACTGCTTGTCTGAGATCCATGTCATTGC 13944 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC--GCGAAAGAGGTGGTCC 794574 ||| || ||||| | | | | |||| ||| |||||||| ||||| || |||| Sbjct 13945 CCATTCAGCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAGACGT-GTCC 14003 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 ||| | | | || || ||| || ||||||||||| |||||| |||| ||||||| Sbjct 14004 -TCTGGGCAGTTTCGCGGATGTATGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATG 14062 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || |||||||||||| || ||||| Sbjct 14063 TTTTCAATCATGATCTGGAAGCCGTAGAAGCA 14094 Score = 107 bits (118), Expect = 3e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 793934 GTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTA 793993 ||| ||||||||| ||||||| |||| |||||| | ||| ||||| | | ||| Sbjct 13414 GTTTGTCTTGCCCGCGAGCGAAATCATCTCCATAAAGTCGAATGGGTTTGTAGAACCGTA 13473 Query 793994 GTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCA 794053 |||||||||| || || | | || || | || || ||||| || ||||| ||||| Sbjct 13474 GTGCTTCTCGTTACCCAGTGCTACTAGTAGTCTATCTGCTACGAACTCGATGTATTGGCA 13533 Query 794054 CATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCT 794111 ||| | | ||||||||||| ||||| ||||| || | ||| |||| ||||| Sbjct 13534 CATCTGCTCTGCGTTCATGCCAATGAGGCGGACGGGAAGGGCGTCG--GACAGGAACTCC 13591 Query 794112 TTCTCGATCTCGACGGC 794128 ||||||||||||||||| Sbjct 13592 TTCTCGATCTCGACGGC 13608 >seq23 Length=274361 Score = 131 bits (144), Expect = 3e-24 Identities = 232/332 (70%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||| || || || | ||| | |||||| || || || |||||||| || |||| Sbjct 223601 CACCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCT 223660 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||| |||||||| |||| || ||||| ||||||||||| || ||||| | Sbjct 223661 TCTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGA 223720 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-TGT-TGATCCACTTCATCGC 794516 | | || | || || |||| || | | ||| | | |||||| |||| || Sbjct 223721 ACGCTACCAATCGTTCACCAAA-----GCACGACTGCTTGTCTGAGATCCATGTCATTGC 223775 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC--GCGAAAGAGGTGGTCC 794574 ||| || ||||| | | | | |||| ||| |||||||| ||||| || |||| Sbjct 223776 CCATTCAGCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAGACGT-GTCC 223834 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 ||| | | | || || ||| || ||||||||||| |||||| |||| ||||||| Sbjct 223835 -TCTGGGCAGTTTCGCGGATGTATGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATG 223893 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || |||||||||||| || ||||| Sbjct 223894 TTTTCAATCATGATCTGGAAGCCGTAGAAGCA 223925 Score = 107 bits (118), Expect = 3e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 793934 GTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTA 793993 ||| ||||||||| ||||||| |||| |||||| | ||| ||||| | | ||| Sbjct 223245 GTTTGTCTTGCCCGCGAGCGAAATCATCTCCATAAAGTCGAATGGGTTTGTAGAACCGTA 223304 Query 793994 GTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCA 794053 |||||||||| || || | | || || | || || ||||| || ||||| ||||| Sbjct 223305 GTGCTTCTCGTTACCCAGTGCTACTAGTAGTCTATCTGCTACGAACTCGATGTATTGGCA 223364 Query 794054 CATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCT 794111 ||| | | ||||||||||| ||||| ||||| || | ||| |||| ||||| Sbjct 223365 CATCTGCTCTGCGTTCATGCCAATGAGGCGGACGGGAAGGGCGTCG--GACAGGAACTCC 223422 Query 794112 TTCTCGATCTCGACGGC 794128 ||||||||||||||||| Sbjct 223423 TTCTCGATCTCGACGGC 223439 >seq29 Length=171343 Score = 127 bits (140), Expect = 3e-23 Identities = 231/332 (70%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||| || || || | ||| | || ||| ||| || || |||||||| || |||| Sbjct 54106 CACCCTCATCACGGCAGATGAGCTCATTGGAGAAGGTAAGACCAGGCATGAGTCCACGCT 54165 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||| |||||||| |||| || ||||| ||||||||||| || ||||| | Sbjct 54166 TCTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGA 54225 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT-TGT-TGATCCACTTCATCGC 794516 | | || | | ||| |||| || | | ||| | | |||||| |||| || Sbjct 54226 ATGCTACCAATCTCTCACCAAA-----GCACGACTGCTTGTCTGAGATCCAAGTCATTGC 54280 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAA-AGAGGTGGTCC 794574 ||| || ||||| | | | | |||| ||| |||||||| ||| ||| ||| || Sbjct 54281 CCATTCAGCCTTGCGCTTGATGGCAGGCATCGTCTCGATGGCATTGAATAGACGTGTTC- 54339 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 || | | || || |||||| ||||||||||| |||||| |||| ||||||| Sbjct 54340 -GCTGTGCGGTTTCGCGGATGTAGGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATG 54398 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || |||||||||||| || ||||| Sbjct 54399 TTTTCAATCATGATCTGGAAGCCGTAGAAGCA 54430 Score = 125 bits (138), Expect = 1e-22 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 793934 GTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTA 793993 ||||||||||||| | ||||| |||| |||||| | ||| ||||| |||| ||| Sbjct 53751 GTTGGTCTTGCCCGCCAGCGAAATCATCTCCATGAAGTCGAATGGGTTCGCCGAGTTGTA 53810 Query 793994 GTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCA 794053 ||||||||| || || | | || || | ||| || || || || ||||||||||| Sbjct 53811 GTGCTTCTCATTACCCAGTGCTACTAGTAGTCTGTCTGCTACAAACTCGATGTACTGGCA 53870 Query 794054 CATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTT 794113 ||| | | ||||||||||||||||| ||||| || | ||| || ||||| || Sbjct 53871 CATCTGCTCTGCGTTCATGCCGATGAGGCGGACGGGGAGGGCATCGGAGAGGAACTCCTT 53930 Query 794114 CTCGATCTCGACGGCCTCGATGATGAT 794140 |||||||||||||| | || |||||| Sbjct 53931 TTCGATCTCGACGGCTTGGAGGATGAT 53957 >seq3 Length=2186555 Score = 100 bits (110), Expect = 5e-15 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||| || ||||| |||| ||||||| |||||||||| ||| ||| Sbjct 150071 GTACTTGGTGACACCCTTTGTTCCCTCAGAGATGGCGTGCTTGGCCAGTTCACCGGGCAG 150012 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || | |||| ||||||||||| |||| ||| || |||||| | Sbjct 150011 GATAAGTCTGACGGATGTCTGGATCTCTCGGGATGAGATGGTCGACTTCTTGTTGTAGGA 149952 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 || || | |||||||| ||||||| |||| ||||||||||| || ||| Sbjct 149951 AGCGAGCTTGGATGCCTCGGTAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAG 149897 >seq12 Length=1303331 Score = 89.7 bits (98), Expect = 8e-12 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||| |||| |||||||| |||| ||||||| |||| || || || ||| Sbjct 283742 GTACTTGGTGACGCCCTTTGTACCCTCAGAGATGGCGTGCTTGGCGAGCTCTCCAGGCAG 283801 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || | |||| ||||||||||| || | ||| || |||||| || || Sbjct 283802 GATGAGTCTGACGGATGTCTGGATCTCACGCGACGAGATGGTCGACTTCTTGTT-GTACG 283860 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 || || | |||||||| |||| || |||| ||||||||||| || ||| Sbjct 283861 AAGCGAGCTTGGAAGCCTCGGTAGCGATTCGCTCGAAGATGTCGTTGACGAAAGAG 283916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230018317606