Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq35 114 2e-20 seq29 114 2e-20 seq23 114 2e-20 seq1 111 2e-19 >seq35 Length=121122 Score = 114 bits (126), Expect = 2e-20 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||| | | || | ||||| || ||||| || |||||||| || |||||||| Sbjct 13772 CCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTTC 13831 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || || || Sbjct 13832 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAC 13891 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCA 39814 || || | || || || | | | | || | | ||||| || |||||| ||| Sbjct 13892 GCTACCAATCGTTCACCAAAGCACGACTGCTTGTCTGAGATCCATGTCATTGCCCATTCA 13951 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT-TTTTCATC 39873 || || ||| | ||||| || || || ||||| || ||| ||| | | | Sbjct 13952 GCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAGA-CGTGTCCTCTGGGC 14010 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | | || | |||||||| || | || || | ||||| |||||||||||||| Sbjct 14011 AGTTTCGCGGATGTATGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATGTTTTCAAT 14070 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 | ||||| || ||||| || || || || || Sbjct 14071 CATGATCTGGAAGCCGTAGAAGCACCTGGCCTC 14103 >seq29 Length=171343 Score = 114 bits (126), Expect = 2e-20 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||| | | || | || || || || || || |||||||| || |||||||| Sbjct 54108 CCCTCATCACGGCAGATGAGCTCATTGGAGAAGGTAAGACCAGGCATGAGTCCACGCTTC 54167 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || || ||| Sbjct 54168 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAT 54227 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCA 39814 || || | |||||| || | | | | || | | ||||| || |||||| ||| Sbjct 54228 GCTACCAATCTCTCACCAAAGCACGACTGCTTGTCTGAGATCCAAGTCATTGCCCATTCA 54287 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTT-TTTCATC 39873 || || ||| | |||||| || || || ||||| || ||| |||| | | Sbjct 54288 GCCTTGCGCTTGATGGCAGGCATCGTCTCGATGGCATTGAATAGA-CGTGTTCGCTGTGC 54346 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || | || ||||| || | || || | ||||| |||||||||||||| Sbjct 54347 GGTTTCGCGGATGTAGGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATGTTTTCAAT 54406 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 | ||||| || ||||| || || || || || Sbjct 54407 CATGATCTGGAAGCCGTAGAAGCACCTGGCCTC 54439 >seq23 Length=274361 Score = 114 bits (126), Expect = 2e-20 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 |||||||| | | || | ||||| || ||||| || |||||||| || |||||||| Sbjct 223603 CCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTTC 223662 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||||||| || ||||| || ||||| ||||| ||||||||||| ||||| || || || Sbjct 223663 TTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAAC 223722 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCA 39814 || || | || || || | | | | || | | ||||| || |||||| ||| Sbjct 223723 GCTACCAATCGTTCACCAAAGCACGACTGCTTGTCTGAGATCCATGTCATTGCCCATTCA 223782 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT-TTTTCATC 39873 || || ||| | ||||| || || || ||||| || ||| ||| | | | Sbjct 223783 GCCTTGCGCTTGATGGCTGGCATCGTCTCGATGGCATTGAAAAGA-CGTGTCCTCTGGGC 223841 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | | || | |||||||| || | || || | ||||| |||||||||||||| Sbjct 223842 AGTTTCGCGGATGTATGTATCGATGAGGAGGGAGTAGACTTCTGCGTGGATGTTTTCAAT 223901 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 | ||||| || ||||| || || || || || Sbjct 223902 CATGATCTGGAAGCCGTAGAAGCACCTGGCCTC 223934 >seq1 Length=6229779 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGT 69647 |||| |||||| |||| || | |||||||||||| ||||| || ||| ||||| | | Sbjct 991566 TCCTCTACTCGTCTCATGAACATATCGGGAATCCAGAGAGCGTAGAAA-AGATCGCGTGC 991508 Query 69648 TCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 || |||||| || || || | || ||| ||||| ||||| | | ||| | || Sbjct 991507 TCGGACTTCTTCTTTACCGTGGTTCTTGCGCAAG-TCGAGGAACTCGAAGACATCCGCAT 991449 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 ||||||| || | || || || | | |||| ||||| || || ||||| ||||| | || Sbjct 991448 GCCATGGCTCAATGTAGATGGCAAAGGCTCCAGGTCGCTTGTTGCCTCCTTGATCGACGT 991389 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||| || ||||| || ||||||| ||||| || | |||||| || || Sbjct 991388 ATCGAGCGGTGTTGTTGTAGACTCGGAGCATAGGTACAATACCGTTCGA 991340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907477700560