Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11 116 5e-21 seq29 107 2e-18 seq35 104 3e-17 seq23 104 3e-17 seq1 93.3 5e-14 >seq11 Length=1302298 Score = 116 bits (128), Expect = 5e-21 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | || ||||| || || | || ||||||||| | | Sbjct 896400 GCATCCTTGTACAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCCTCGAGAATAGCATAC 896341 Query 118890 CAGACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | | | || | ||||| || || || || || | ||||||||| | | Sbjct 896340 CAGAGTTTCTGGGCCTTG-ACAGTCTTCTTTGCGCGTCCTTCCTTCTCGTACTTCAAGAA 896282 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | || ||||| || || | || || |||||| | | |||||||||| Sbjct 896281 CAGCTCATCGAACTCCTCTCCGTAAACTTCGTGTAGGTTTGGTGCTTCAGCTGGGCAGAA 896222 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | |||| ||||| || || ||||||| | ||| ||||||||||| || Sbjct 896221 GAGGGGCCAATCACCATTTTCCTCTACACGTCTCATGAACATGTCGGGGATCCAGAGAGC 896162 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||||||| || ||| ||| ||||||| | || || || ||| | || | || Sbjct 896161 GTAGAAGAGGTCGCGAGCGCGCACTTCTTCTTTACCGTGGTTCTTACGGAGGTCGAGGAA 896102 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || | | |||||||||||| || || | ||| Sbjct 896101 TTCGAAAACATCCGCGTGCCATGGCTCAATGTA 896069 >seq29 Length=171343 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 |||||| |||||| ||||||| ||||| |||||| ||||| |||||||| || ||||| Sbjct 54107 ACCCTCATCACGGCAGATGAGCTCATTGGAGAAGGTAAGACCAGGCATGAGTCCACGCTT 54166 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||| | |||||| || || || || |||||||||||||| ||||| ||| ||||| Sbjct 54167 CTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAA 54226 Query 130153 CGCAAAGAGACGCTCAGCAAAG 130174 || | | | |||| ||||| Sbjct 54227 TGCTACCAATCTCTCACCAAAG 54248 >seq35 Length=121122 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 |||||| |||||| ||||||| || || ||||| ||||| |||||||| || ||||| Sbjct 13771 ACCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTT 13830 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||| | |||||| || || || || |||||||||||||| ||||| ||| ||||| Sbjct 13831 CTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAA 13890 Query 130153 CGCAAAGAGACGCTCAGCAAAG 130174 ||| | | || ||| ||||| Sbjct 13891 CGCTACCAATCGTTCACCAAAG 13912 >seq23 Length=274361 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 |||||| |||||| ||||||| || || ||||| ||||| |||||||| || ||||| Sbjct 223602 ACCCTCATCACGGCAGATGAGCTCGTTGGAGAATGTAAGACCAGGCATGAGTCCACGCTT 223661 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||| | |||||| || || || || |||||||||||||| ||||| ||| ||||| Sbjct 223662 CTTGAGCCAGAAGATGGCGGCGAAAGAACCAGAGAAGAAGATGCCCTCTACAGCGGCGAA 223721 Query 130153 CGCAAAGAGACGCTCAGCAAAG 130174 ||| | | || ||| ||||| Sbjct 223722 CGCTACCAATCGTTCACCAAAG 223743 >seq1 Length=6229779 Score = 93.3 bits (102), Expect = 5e-14 Identities = 224/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | || ||||| || || | || |||||||| | | Sbjct 991764 GCATCCTTGTACAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATAGCATAC 991705 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | || | ||| ||||| || || || || || | ||||||||| | | Sbjct 991704 CATAGCTTCTG-AGCCTTGACAGTCTTCTTTGCCCGTCCTTCCTTCTCGTACTTCAAGAA 991646 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGA 119007 ||| | || || || || || | || ||| || |||||| | | | ||||||| Sbjct 991645 GAGCTCATCGAATTCCTCTCCGTACACTTCATGA-AGGTTTGGTGCTTCAGCGGGGCAGA 991587 Query 119008 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067 | | || ||| | ||| |||||| || || ||||||| | || || |||||||| | Sbjct 991586 ACAAAGGCCAATCACCGTTCTCCTCTACTCGTCTCATGAACATATCGGGAATCCAGAGAG 991527 Query 119068 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | |||| ||||| || || ||||||| | || || || ||||| || | | Sbjct 991526 CGTAGAAAAGATCGCGTGCTCGGACTTCTTCTTTACCGTGGTTCTTGCGCAAGTCGAGGA 991467 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 | || | || |||||| ||||| || || | ||| Sbjct 991466 ACTCGAAGACATCCGCATGCCATGGCTCAATGTA 991433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434009512240