Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20hasegawianum_20[genbank_20GCA_5F001972285.1_202016 -12-09] 154 sequences; 39,152,147 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq11 123 6e-23 seq12 109 1e-18 seq7 86.0 1e-11 >seq1 Length=6229779 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | ||| || ||| ||| || |||||||||||||||| |||||| ||| Sbjct 4307423 AGTCTGAGTACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGGGTTCTT 4307364 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||||||| || || || ||||| | || ||||| ||||| |||| |||||| Sbjct 4307363 CCATCTTCCAGCTGTTTTCCCGCAAAGATCAACCGCTGTTGATCAGGTGGAATACCTTCC 4307304 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || |||||||| || || ||||| ||||| || || || || | || Sbjct 4307303 TTATCTTGGATCTTGCTCTTGACAGCATCGATCGTGTCTGAAGACTCGACTTCTAATGTA 4307244 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| || || | ||||| Sbjct 4307243 ATTGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 4307206 Score = 132 bits (146), Expect = 1e-25 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179 |||||| |||||| |||||||| |||| ||||| |||||| | ||||| || Sbjct 991765 GGCATCCTTGTACAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATAGCATA 991706 Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| ||| || ||||||||| || || |||||| ||||||||||| | | Sbjct 991705 CCATAGCTTCTGAGCCTTGACAGTCTTCTTTGCCCGTCCTTCCTTCTCGTACTTCAAGAA 991646 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 |||||| ||||||||| ||| || || |||| || || || ||| ||||||||| Sbjct 991645 GAGCTCATCGAATTCCTCTCCGTACACTTCATGAAGGTTTGGTGCTTCAGCGGGGCAGAA 991586 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 | | ||| | ||||| |||| |||||| ||||||| | || | |||||| || Sbjct 991585 CAAAGGCCAATCACCGTTCTCCTCTACTCGTCTCATGAACATATCGGGAATCCAGAGAGC 991526 Query 178360 ATAGAAAA 178367 ||||||| Sbjct 991525 GTAGAAAA 991518 >seq11 Length=1302298 Score = 123 bits (136), Expect = 6e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179 |||||| |||||| |||||||| |||| ||||| |||||| ||||||| || Sbjct 896401 GGCATCCTTGTACAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCCTCGAGAATAGCATA 896342 Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| || | |||||| ||||||||| || || |||||| ||||||||||| | | Sbjct 896341 CCAGAGTTTCTGGGCCTTGACAGTCTTCTTTGCGCGTCCTTCCTTCTCGTACTTCAAGAA 896282 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 ||||| ||||| ||| ||| || || || | || || || ||| |||||||| Sbjct 896281 CAGCTCATCGAACTCCTCTCCGTAAACTTCGTGTAGGTTTGGTGCTTCAGCTGGGCAGAA 896222 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||| ||| | ||| | ||||| || ||| ||||||| | ||| | | |||||| || Sbjct 896221 GAGGGGCCAATCACCATTTTCCTCTACACGTCTCATGAACATGTCGGGGATCCAGAGAGC 896162 Query 178360 ATAGAA 178365 ||||| Sbjct 896161 GTAGAA 896156 >seq12 Length=1303331 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | ||| || ||| ||| || ||||| || || || | |||||| | | Sbjct 512510 AGTCTGAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCTGAAAGGGTTCGT 512451 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||||||| || || || ||||| || | ||||| ||||| || | |||||| Sbjct 512450 CCATCTTCCAGCTGTTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGGATACCTTCC 512391 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || |||||||| || || || || || || || || || || | ||| Sbjct 512390 TTATCTTGGATCTTGCTCTTGACAGCATCAATCGTATCGGACGACTCGACTTCCAAAGTA 512331 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || | ||||| ||||| | ||||| Sbjct 512330 ATGGTCTTTCCTGTCAATGTCTTGACAAAGATTTGCAT 512293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || ||| ||||| || ||||| Sbjct 512124 TCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGGCATCGATAGTATCAGAA 512065 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| |||||||||||||| || || |||||||| || | ||||||| Sbjct 512064 GACTCGACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCATT 512008 >seq7 Length=1728130 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || |||||||| || || | ||||||| |||||| || |||||| Sbjct 1697615 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCATCCTCGAGCTGC 1697674 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || || ||||| || || || Sbjct 1697675 TTGCCTGCGAAGATGAGACGCTGTTGATCGGGCGG 1697709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149712848210