Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythrobasidium_20yunnanense_20[genbank_20GCA_5F001600175.1_202016- 03-01] 11 sequences; 20,930,538 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 116 6e-22 seq4 102 1e-17 >seq5 Length=2034464 Score = 116 bits (128), Expect = 6e-22 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || ||||| |||||||| |||||||| ||||| |||| Sbjct 1395552 CGCCAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAGGGAATCACAAAGCCTGCTA 1395610 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| |||| | | ||||| |||||| | | ||| | |||||||||||| Sbjct 1395611 TCCGTCGTTTGGCGAGAAGAGGTGGTGTCAAGAGAATAAGTGGTCTCATCTATGAAGAGA 1395670 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTC 16576 |||| |||| |||||||||||||| Sbjct 1395671 CCCGTGGTGTTCTGAAGATCTTCCTC 1395696 Score = 111 bits (122), Expect = 2e-20 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || ||||| |||||||| |||||||| ||||| |||| Sbjct 1387918 CGCCAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAGGGAATCACAAAGCCTGCTA 1387976 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| |||| | || ||||| || ||| | | ||| | |||||||||||| Sbjct 1387977 TCCGTCGTTTGGCGAGACGAGGTGGTGTTAAGAGAATAAGTGGTCTAATCTATGAAGAGA 1388036 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 |||| ||| | |||||||||||| ||| Sbjct 1388037 CCCGTGGTGTACTCAAGATCTTCCTCGAGA 1388066 Score = 105 bits (116), Expect = 1e-18 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | |||| ||||||||||||||||||||||| |||| Sbjct 1599385 CGCCAAGCGACACCGCAAGATCT-TGAGAGACAACATCCAAGGAATCACCAAGCCTGCTA 1599327 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 |||||||||| || || | ||||| || |||||| ||||||| || |||| Sbjct 1599326 TCCGTCGTCTTGCACGAAGAGGTGGTGTTAAGCGTATCTCTGGTCTGATCTA 1599275 Score = 93.3 bits (102), Expect = 7e-15 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| |||| || ||||| |||||||| ||||| || ||||| |||| Sbjct 794833 CGCTAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAGGGAATTACAAAGCCTGCTA 794775 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||||||||| || || | ||||| || |||||| |||| || Sbjct 794774 TCCGTCGTCTAGCACGAAGAGGTGGTGTTAAGCGTATCTCGGG 794732 >seq4 Length=2292558 Score = 102 bits (112), Expect = 1e-17 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| |||| || ||||| ||||||||||||||||| ||||| |||| Sbjct 489317 CGCTAAGCGACACCGCAAGATC-CTGCGAGACAACATCCAAGGAATCACAAAGCCTGCTA 489375 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 |||||||||| || || | ||||| ||||||||| || Sbjct 489376 TCCGTCGTCTTGCACGAAGAGGTGGTGTCAAGCGTATC 489413 Score = 96.9 bits (106), Expect = 5e-16 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||||| | |||| |||||||| |||||||| ||||| |||| Sbjct 321817 CGCCAAGCGACACCGCAAGATCT-TGAGAGACAACATCCAGGGAATCACAAAGCCTGCTA 321875 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 |||||||||| || || | || || ||||||||| ||||||| || |||| Sbjct 321876 TCCGTCGTCTTGCACGAAGAGGAGGTGTCAAGCGTATCTCTGGTCTGATCTA 321927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189942623