Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibroporia_20radiculosa_20[genbank_20GCA_5F000313525.1_202012-03-30] 861 sequences; 28,378,039 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq386 107 2e-18 seq329 104 2e-17 seq545 96.9 3e-15 >seq386 Length=196871 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| ||| ||||| || |||||||||||||| | Sbjct 173670 CCACCGCGGAGACGGAGAACGAGGTGAAGCGTGGACTCCTTCTGAATGTTATAATCCGAC 173611 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||||||||||||| |||| ||||| || || || || || Sbjct 173610 AAAGTGCGACCATCCTCCAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGCGGG 173551 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||| | | |||||| Sbjct 173550 ATACCTTCCTTGTC-TTGAATCTTGGCCTTGACGTTGTCAATCGTGTCCGACGACTCCAC 173492 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || |||||||| || || || || ||||| Sbjct 173491 CTCTAACGTGATTGTCTTTCCTGTCAACGTCTTGACAAAAATCTGCAT 173444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| ||||| || ||||| || || ||| |||||| | || Sbjct 173874 TGAAGAGTGGACTCTTTCTGAATATTGTAATCCGACAGCGTCCTCCCGTCTTCCAATTGC 173815 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| || || |||||||||||||| || ||||| || || ||| | || Sbjct 173814 TTTCCAGCAAAGATAAGGCGCTGCTGATCGGGAGGAATACCTTCCTTATC-CTGAATCTT 173756 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | ||| ||||| | || | |||||||| || Sbjct 173755 GGCCTTCACGTTGTCGATCGTGTCTGACGACTCAACCTCCAGCGTGATAGTCTTGCCCGT 173696 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | ||| || ||||| || |||||| Sbjct 173695 AAGCGTCTTCACGAAAATCTGCATA 173671 >seq329 Length=122043 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 || || || |||||||||||| || |||| |||||||| ||||| ||||| || Sbjct 116901 TCCTTCTGGATGTTATAATCGGACAGGGTGCGACCATCTTCGAGTTGTTTGCCAGCGAAG 116960 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || ||||| ||||| || || || || ||||| ||||| ||| || ||| | | Sbjct 116961 ATAAGACGCTGCTGGTCCGGGGGAATACCTTCCTTGTCTTGGATCTTCGCTTTCACGTTA 117020 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | |||||| | | ||| ||||| | || | |||||||||||| | ||| || || Sbjct 117021 TCAATTGTGTCAGAAGACTCAACCTCCAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACA 117080 Query 139754 AATATTTGCATA 139765 || ||||||||| Sbjct 117081 AAGATTTGCATA 117092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 139559 AAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGC 139618 ||||| | ||| ||| || |||||||||||||| | |||| || |||||| Sbjct 117168 AAGTGGAGAGTACTCTCCTTCTGAATGTTATAATCAGAAAGAGTGCGACCATCCTCGAGC 117227 Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || || || || |||| || || || |||||||||||||||||||| || || ||| Sbjct 117228 TGCTTGCCGGCGAAGATGAGGCGCTGTTGATCGGGAGGTATGCCTTCCTTATCCTGGATC 117287 Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || || | | || | ||||||| | || ||||| | || | |||||||| Sbjct 117288 TTCGCCTTCACATTGTCAATAGTGTCGGAAGATTCAACCTCCAACGTAATGGTCTTGCCC 117347 Query 139739 GTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| || || || || |||||| Sbjct 117348 GTCAGCGTCTTGACAAAGATCTGCATA 117374 >seq545 Length=209590 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671 ||||| |||||||||||||| |||||| || |||||| | || || ||||| ||| Sbjct 96800 TTTGCAGAACGTCTGGTCGCTTTTGCTGCTGTCGAAGGTATATTCTTCTCGGGGTCTTTC 96859 Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 || | ||||| | |||| || | ||||| | ||||| || || |||| | ||||| Sbjct 96860 GCATCCATATTCTGGCTCAAGAAGCGTGGGC-TTATGCCTGGTCTTACGTATTCAAACGA 96918 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTAT 52782 |||| |||||||| || |||||||| ||||| || |||||| |||| Sbjct 96919 ACTGATCATACGCGACGAGGGCATGCACACTGATTTCGCCTGTTTGCTTTAT 96970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058661111200