Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq114 107 2e-18 seq174 98.7 8e-16 seq49 82.4 6e-11 >seq114 Length=262464 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||| |||||||| || ||||| ||||||| Sbjct 228707 CCTCCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 228766 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | ||| ||||| ||| Sbjct 228767 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGG 228826 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | | ||| ||| || | ||| Sbjct 228827 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATAGTGTCCGACGACTCGACC 228886 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | || |||||||| || ||||| Sbjct 228887 TCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 228933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| |||||||| ||||| ||| || | ||||||| ||||| ||||| || | Sbjct 228514 CTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCGAA 228573 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 || || | ||||||||| ||| | ||| |||||||| |||||| || || | Sbjct 228574 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 228633 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | ||| || ||| | ||| || | || |||||||||||||| | || ||||| Sbjct 228634 GTCGATGGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGAC 228693 Query 21164 AAATATTTGCAT 21175 || |||||||| Sbjct 228694 GAAGATTTGCAT 228705 >seq174 Length=181799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || || | ||||| ||||||||| || || ||||| || |||| Sbjct 45078 TTCCTCCACGGAGACGCAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCG 45137 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | ||||| ||||||||||| ||| | ||||| | ||| ||||| | Sbjct 45138 AGAGCGTGCGACCATCCTCGAGCTGTTTGCCGGCAAAGATAAGACGCTGTTGGTCGGGAG 45197 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||||| ||||| | | ||| || || | ||| Sbjct 45198 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCGGATGACTCGA 45257 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | ||| |||||||| || ||||| Sbjct 45258 CCTCGAGAGTGATGGTCTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 45306 >seq49 Length=440159 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 |||| || ||| |||| |||||||||||||||||||| ||||| ||||| ||| || Sbjct 335855 CGCA-CCGGAGGACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGCTCAGTGTG 335913 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 | | ||||| ||||| ||||| ||| | || || | ||||||||| Sbjct 335914 CGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTC 335960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249350012424