Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq114 140 4e-28 seq174 114 1e-20 >seq114 Length=262464 Score = 140 bits (154), Expect = 4e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| || ||| || ||| |||| || |||||||| || Sbjct 228509 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCG 228568 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 228569 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 228628 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||| ||| || || |||| ||||||||| ||||| || || ||| Sbjct 228629 ACATTGTCGATGGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTC 228688 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||||||||| Sbjct 228689 TTGACGAAGATTTGCAT 228705 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| |||| ||| |||||| || || |||||||| | | Sbjct 229217 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 229276 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 || || || | || || |||||||| || ||||| || || ||||||||||||| Sbjct 229277 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCGG 229331 >seq174 Length=181799 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | || || || | || || |||||||| ||||| || Sbjct 45343 CTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 45402 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||| ||||| ||||| | || | || |||||| ||| ||| | |||| |||| || Sbjct 45403 GATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCC-TGAATCTTTGCCTTGA-CG 45460 Query 43111 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||| ||||| || |||| || ||||| |||||||| || ||||| Sbjct 45461 TTGTCGATGGTGTCGGAGGATTCAACCTCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTG 45520 Query 43170 ACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 45521 ACGAAGATTTGCAT 45534 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| | || ||||| | || || |||||||| || ||||| Sbjct 44888 TCCTTTTGGATGTTGTAATCCGAGAGGGTCCGGCCATCCTCGAGCTGCTTCCCTGCGAAG 44947 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||||| || | | |||||| ||| ||| || |||| ||| Sbjct 44948 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTCGCCTTGA-CGTT 45006 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| ||| || || || | |||||||| || |||||||| ||||| || Sbjct 45007 GTCAATCGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTTCCCGTTAGGGTCTTAAC 45066 Query 43172 AAAGATTTGCATT 43184 || || |||||| Sbjct 45067 GAAAATCTGCATT 45079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803919263920