Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq173 149 9e-31 seq362 107 3e-18 seq6 100 4e-16 >seq173 Length=183199 Score = 149 bits (164), Expect = 9e-31 Identities = 368/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| || ||| ||||| |||||||| | || || || |||||||| || ||||| Sbjct 161389 CATGCAAAGTCGGTGTGCATCCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGG 161330 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 161329 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAAGGAGCCCGAGAAGAAG 161270 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--- 50136 || || || || ||||||||||| || || | || | | ||| |||||| | Sbjct 161269 ATGCCCTCGACGGCGGCAAAGGCGACGAGGCGTTCAGCGAAGGTGGACTTGTCATCTGAG 161210 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| ||||||||||| || | ||||| || || || | ||| | Sbjct 161209 ATCCACTTCATGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGACGGCGTCG 161150 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| || | | || || | || || ||||| | || || | Sbjct 161149 AAGAGGTACTCGCGCTGCACGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTC 161090 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 161089 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGCGGCT 161030 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | | || || ||| | | || || || || || || || || || Sbjct 161029 TGGACCTCGTTCGAGAACCGCTCAACGAGGTTCTCGTTGACGATACCATCGGACGCAGCG 160970 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAA 50433 || || || | || || || || || ||||||| | || | | ||||| Sbjct 160969 AAGAAGGCGAGGACGTGGGAGATGAAGTGACGTTCGTTGTCGTTGAGCTTGGTGTTCCAG 160910 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 ||| || || || || | || | || ||| ||||||| || || ||||| ||||| Sbjct 160909 TCAACCATGTCCTTGGACAGGTCCATCTCCTCCGCTGTCCAGAAAGAAGCCTCGGCCTTC 160850 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 160849 TTGTACATTTGCCAGAT 160833 >seq362 Length=48712 Score = 107 bits (118), Expect = 3e-18 Identities = 173/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| || ||| ||||| |||||||| | || || || ||| |||| || ||||| Sbjct 45940 CATGCAAAGTCGGTGTGCATCCCCTCGTCGCGGCTGATGAGCTCGGTGGAGAAGGTGAGG 45999 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || || || || ||||| || || || || || || || || || ||| Sbjct 46000 CCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATCGATGCGAAGGAGCCCGAGAAAAAG 46059 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--- 50136 || || | || | | ||||||| || || | ||| | | ||| |||||| | Sbjct 46060 ATGCCCTTGACGGTGACAAAGGCGACGAGGCGCTCAGCGAAGGTGGACTTGTCATCTGAG 46119 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| ||||||||||| || | || || || || || | ||| | Sbjct 46120 ATCCACTTCATGGCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGACGGCGTCG 46179 Query 50197 AAGAGATA 50204 ||||| || Sbjct 46180 AAGAGGTA 46187 >seq6 Length=777208 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 || ||||||||| ||||| |||| ||||| |||||||| || |||||||||||||| Sbjct 82582 CAGCAAACATGCAAAATCTGTATGCATGCCCTCATCTCTACTGATGAGTTCGTTGGAAAA 82523 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 ||| | |||||||| | || ||||| || ||||| |||||| || || || || || Sbjct 82522 CGTCAAACCGGGCATCAATCCCCGCTTCTTCAGCCAGTATATGGCGGCGAAAGAGCCTGA 82463 Query 50073 AAAGAAGATTCCTTCTAC 50090 ||||| || || || || Sbjct 82462 GAAGAAAATACCCTCCAC 82445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251615418960