Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq600 140 2e-28 seq95 140 2e-28 seq58 125 5e-24 seq30 120 2e-22 seq1697 95.1 8e-15 >seq600 Length=13353 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8349 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8408 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8409 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 10355 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTG 10414 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 10415 GCCAATATTTAGCTTTA 10431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 62/69 (90%), Gaps = 5/69 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 27 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 86 Query 25957 TAATCCTTT 25965 |||||| || Sbjct 87 TAATCCATT 95 >seq95 Length=298476 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 39678 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 39737 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 39738 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 39772 >seq58 Length=383431 Score = 125 bits (138), Expect = 5e-24 Identities = 183/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| ||||||| ||||| ||||| || ||||||||||| |||||| | || ||| Sbjct 371232 CCAAGATCGAGGGCAAGGGGAACGGCATCAAAACCGTCATCCCGAACATGTCCGACGTCT 371173 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||||| ||||| | || |||||||| || | ||||| ||||| || |||| Sbjct 371172 CCCGCGCGCTCTCCCGCCCCCCGACGTACCCGACCAAGTTCTTCGGCTGCGAGCTCGGCG 371113 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| ||| || | || ||||| |||| |||||| ||||| |||| || | | Sbjct 371112 CGCAGACGACGTTCGACGAGAAGAACGACCGCTACATCGTGAACGGCGCGCACGACGCCG 371053 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | |||| || | || |||| || || |||||| ||||| || | ||| Sbjct 371052 CGCGCCTGCGCGAGCTGCTCGACGCGTTCATCGACAAGTTCGTGCTCTGCAAGAGCTGCA 370993 Query 6472 ATAACCCGGAGACCGAGCT 6490 | ||||||||||| || || Sbjct 370992 AGAACCCGGAGACGGACCT 370974 >seq30 Length=554118 Score = 120 bits (132), Expect = 2e-22 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| ||||||| || || ||||| || ||||||||||| |||||| | || ||| Sbjct 84039 CCAAGATCGAGGGCAAAGGGAACGGCATCAAAACCGTCATCCCGAACATGTCCGACGTCT 83980 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||||| ||||| | || |||||||| || | ||||| ||||| || |||| Sbjct 83979 CCCGCGCGCTCTCCCGCCCCCCGACGTACCCGACCAAGTTCTTCGGCTGCGAGCTCGGCG 83920 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| ||| || | || ||||| |||| |||||| ||||| |||| || | | Sbjct 83919 CGCAGACGACGTTCGACGAGAAGAACGACCGCTACATCGTGAACGGCGCGCACGACGCCG 83860 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | |||| || | || |||| || || |||||| ||||| || | ||| Sbjct 83859 CGCGCCTGCGCGAGCTGCTCGACGCGTTCATCGACAAGTTCGTGCTCTGCAAGACCTGCA 83800 Query 6472 ATAACCCGGAGACCGAGCT 6490 | ||||||||||| || || Sbjct 83799 AGAACCCGGAGACGGACCT 83781 >seq1697 Length=1326 Score = 95.1 bits (104), Expect = 8e-15 Identities = 63/70 (90%), Gaps = 5/70 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1173 Query 25957 TAATCCTTTC 25966 |||||| ||| Sbjct 1172 TAATCCATTC 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939386728534