Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq174 140 3e-28 seq114 87.8 2e-12 >seq174 Length=181799 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || || || | || Sbjct 45306 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCC 45247 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| ||||||||||| || || ||||| ||| Sbjct 45246 GACACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAA 45187 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||||||| | |||||| ||||| |||| ||||||||| Sbjct 45186 CAGCGTCTTATCTTTGCCGGCAAACAGCTCGAGGATGGTCGCACGCTCTCGGATTACAAC 45127 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| | ||| | || |||| | || ||||| Sbjct 45126 ATCCAGAAAGAGTCCACTCTGCATCTCGTCCTGCGTCTCCGTGGAGG 45080 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || |||| || || || |||| ||||| || || | | Sbjct 45078 ATGCAGATTTTCGTTAAGACCCTAACGGGAAAGACCATCACCCTTGAGGTCGAGTCGTCG 45019 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || ||||||||||| || ||||| || Sbjct 45018 GACACGATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 44959 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||| | |||||| ||| ||| |||| ||||||||| Sbjct 44958 CAGCGTCTTATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGGACCCTCTCGGATTACAAC 44899 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| |||||||| Sbjct 44898 ATCCAAAAGGAATCCAC 44882 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | | Sbjct 45815 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCTTCG 45756 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| ||||||||| Sbjct 45755 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAA 45696 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| |||||| | ||||| |||||| Sbjct 45695 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 45636 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 45635 ATCCAGAAGGAGTCGAC 45619 >seq114 Length=262464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || || | | Sbjct 228705 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCGTCT 228646 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 228645 GACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 228586 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 228585 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGCGACTACAAC 228526 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 228525 ATTCAGAAGGA 228515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || ||||| || || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 229338 ATCCCCCCCGACCAGCAGCGTCTAATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACG 229279 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 | |||||||||||||| || || || |||||| | || || || | || |||| ||| Sbjct 229278 CTGTCCGATTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGTGGA 229219 Query 22444 GG 22445 || Sbjct 229218 GG 229217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718209057410