Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq173 125 2e-23 seq362 89.7 1e-12 seq161 89.7 1e-12 >seq173 Length=183199 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | | ||| |||| ||| | || || | || ||| | Sbjct 161442 ATCATCACGGACGCCGTCGCCATCGAGCAGGAGTTCCTCACGGAAGCGCTCCCGTGCAAG 161501 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||||| || |||||| | ||||||||||| ||||| || |||||| | Sbjct 161502 CTCATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTG 161561 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | | || || | || || ||||||||| || ||||||||| | ||| ||||| Sbjct 161562 CTCGTGTCCCTCGGAAACGACAAGGTGTACAACGTCACGAACCCCTTCGACTTCATGGAC 161621 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || || || || || || || ||||||||||| ||||| || Sbjct 161622 ATGATCTCCCTGCAGGGCAAGACGAACTTCTTCGAGAAGCGCGT 161665 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | || | ||| ||||||||||||| |||||||| ||| | | Sbjct 158969 CTCATTGGCATGAATGCAAAATTAATGCGACAGTACATCGAGTTCGTAGCTGACAGACTC 158910 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | || |||| || | || ||| | ||| |||||| || || |||| || ||||| Sbjct 158909 CTAGTCTCGCTCGGCAACGACAAACTCTACCACTCCACCAATCCGTTTGATTTCATGGAC 158850 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | || ||||| || || || || |||||||| || || || ||| Sbjct 158849 ATGATCTCGCTCCAGGGAAAGACCAACTTCTTTGAGAAACGCGTC 158805 >seq362 Length=48712 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||| || |||||| | ||||||||| | ||| | || |||||| | Sbjct 45828 GCTCATCGGCATGAACTCGGACCTCATGTGCCAGTACATCAAGTTCTTCGCGGACCGCCT 45769 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || | | || || | || || |||||||| || || ||||||| ||| |||| Sbjct 45768 GCTCGTGTCCCTCGGGAACGACAAGGTGTACAATGTCACAAATCCCTTTGACTTCGTGGA 45709 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC--GAAAAGCGTGTC 243726 | ||||| || || || || || ||||| || |||| ||||||| Sbjct 45708 TATGATTTCCCTGCAGGGCAAGACGAACTTTCTCGAGAAAGGCGTGTC 45661 >seq161 Length=195812 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||||||||| |||| ||| | || || ||||| |||| |||||||| || | || Sbjct 123082 CCAAGCGTCCACGTCTGAGCTCTACGGCAAAGTCGTCGAAACTCCTCAGAGCGAGACGAC 123023 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 ||| || || ||||| ||| ||||| || ||| | ||||| || |||||| | Sbjct 123022 TCCCTTCTACCCTCGCTCCCCCTACGGCTGCGCCAAGCTCTACGCGTACTGGATCACTGT 122963 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || ||| | ||| | || ||||| | ||||| || |||||||||||||| Sbjct 122962 TAACTACAGGGAGGCATACGGAATGTACGCCTGCAATGGTATCCTGTTCAATCACGAGAG 122903 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 ||||| ||||| |||||||| | || ||||||| | || ||| | | | | Sbjct 122902 TCCCAGGCGAGGCAGGACATTCGTGACCAGGAAGATCACGAGAGCGGCCGCAGAGA-TCT 122844 Query 68645 CAATGGTGTCG-AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 || ||| | | | ||| |||||||||| || || ||||| | | |||||||| Sbjct 122843 CACTGGGCAAGCAGCAGTGCTTGTATCTCGGAAACATCGATGCTCAGCGTGATTGGGG 122786 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||||||||| |||| ||| | || || ||||| |||| |||||||| || | || Sbjct 139935 CCAAGCGTCCACGTCTGAGCTCTACGGCAAAGTCGTCGAAACTCCTCAGAGCGAGACGAC 139876 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 ||| || || ||||| ||| ||||| || ||| | ||||| || |||||| | Sbjct 139875 TCCCTTCTACCCTCGCTCCCCCTACGGCTGCGCCAAGCTCTACGCGTACTGGATCACTGT 139816 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || ||| | ||| | || ||||| | ||||| || |||||||||||||| Sbjct 139815 TAACTACAGGGAGGCATACGGAATGTACGCCTGCAATGGTATCCTGTTCAATCACGAGAG 139756 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 ||||| ||||| |||||||| | || ||||||| | || ||| | | | | Sbjct 139755 TCCCAGGCGAGGCAGGACATTCGTGACCAGGAAGATCACGAGAGCGGCCGCAGAGA-TCT 139697 Query 68645 CAATGGTGTCG-AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 || ||| | | | ||| |||||||||| || || ||||| | | |||||||| Sbjct 139696 CACTGGGCAAGCAGCAGTGCTTGTATCTCGGAAACATCGATGCTCAGCGTGATTGGGG 139639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852953935900