Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq114 140 4e-28 seq174 114 1e-20 seq49 84.2 2e-11 >seq114 Length=262464 Score = 140 bits (154), Expect = 4e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| ||||| ||||| || ||| || ||| |||| || |||||||| || Sbjct 228509 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCG 228568 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| ||||| ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 228569 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 228628 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||| ||| || || |||| ||||||||| ||||| || || ||| Sbjct 228629 ACATTGTCGATGGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTC 228688 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||||||||| Sbjct 228689 TTGACGAAGATTTGCAT 228705 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||||| |||| ||| |||||| || || |||||||| | | Sbjct 229217 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 229276 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 || || || | || || |||||||| || ||||| || || ||||||||||||| Sbjct 229277 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCGG 229331 >seq174 Length=181799 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | || || || | || || |||||||| ||||| || Sbjct 45343 CTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 45402 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| ||||| ||||| | || | || |||||| ||| ||| | |||| |||| || Sbjct 45403 GATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCC-TGAATCTTTGCCTTGA-CG 45460 Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| ||||| || |||| || ||||| |||||||| || ||||| Sbjct 45461 TTGTCGATGGTGTCGGAGGATTCAACCTCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTG 45520 Query 42195 ACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 45521 ACGAAGATTTGCAT 45534 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||| | || ||||| | || || |||||||| || ||||| Sbjct 44888 TCCTTTTGGATGTTGTAATCCGAGAGGGTCCGGCCATCCTCGAGCTGCTTCCCTGCGAAG 44947 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||||| || | | |||||| ||| ||| || |||| ||| Sbjct 44948 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTCGCCTTGA-CGTT 45006 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||| || || || | |||||||| || |||||||| ||||| || Sbjct 45007 GTCAATCGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTTCCCGTTAGGGTCTTAAC 45066 Query 42197 AAAGATTTGCATT 42209 || || |||||| Sbjct 45067 GAAAATCTGCATT 45079 >seq49 Length=440159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| ||| ||||||||| || ||||| || ||| || || | || || Sbjct 335866 ACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGCTCAGTGTGCGTCCATCCTCG 335925 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||||| ||||| || ||||| ||||||||||||| ||| Sbjct 335926 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGTGG 335966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199803633760