Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq114 152 6e-32 seq174 143 3e-29 seq85 104 3e-17 seq41 98.7 1e-15 seq65 82.4 9e-11 >seq114 Length=262464 Score = 152 bits (168), Expect = 6e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||| || |||||| |||| ||||||||||||||| Sbjct 228509 GTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCG 228568 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||||||||| || | || |||||||||| ||||||| |||| Sbjct 228569 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 228628 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| ||| || || || | ||||||||| ||||| || || || Sbjct 228629 ACATTGTCGATGGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTC 228688 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 228689 TTGACGAAGATTTGCAT 228705 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| |||||| ||||| |||||||| || Sbjct 228707 CCTCCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 228766 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||||||||| || | |||||| ||||||| || Sbjct 228767 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGG 228826 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||| ||| |||||| ||||| ||| | | | ||||| ||| || || Sbjct 228827 ATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATAGTGTCCGACGACTCGAC 228885 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||| ||||| || || || || |||||||| ||||| Sbjct 228886 CTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 228933 Score = 104 bits (114), Expect = 3e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || |||||| ||||| |||||||||| Sbjct 228933 TGCCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 228992 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | || |||||| |||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct 228993 ACAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTC 229047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | ||||| |||| || |||||| ||||| ||||| |||| Sbjct 229215 TGCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 229274 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 | || ||||| | || |||||||||||||||||||| || | ||||||||||||| Sbjct 229275 ACAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCGG 229331 >seq174 Length=181799 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||||| || |||||| ||||| ||||||||||| |||||||| | || || ||| Sbjct 45610 AGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGC 45669 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||||||||| || | |||||| || |||| || | || |||||||||| |||| Sbjct 45670 TGCTTGCCGGCGAAGATGAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCCTGGATC 45729 Query 46508 TTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||||| ||| | | | |||||| || || || || | ||||| || ||||| Sbjct 45730 TTCGCCTTGA-CGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTGATCGTCTTGCC 45788 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || || ||||| |||||| Sbjct 45789 CGTGAGGGTCTTGACGAAGATCTGCATT 45816 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| || ||||| | || |||||||||||||| || || Sbjct 45343 CTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 45402 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | || |||||| ||| ||||| ||||| ||| Sbjct 45403 GATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTTGCCTTGA-CGT 45461 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||||| || || | || ||||| ||||||||||| || || | Sbjct 45462 TGTCGATGGTGTCGGAGGATTCAACCTCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGA 45521 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 45522 CGAAGATTTGCAT 45534 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| || || || || || | || ||||||||||| || ||||| Sbjct 44888 TCCTTTTGGATGTTGTAATCCGAGAGGGTCCGGCCATCCTCGAGCTGCTTCCCTGCGAAG 44947 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | |||||| ||| ||||||| ||||| ||| Sbjct 44948 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTCGCCTTGA-CGTT 45006 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||| || || || | |||||||| || ||||| || || ||||| Sbjct 45007 GTCAATCGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTTCCCGTTAGGGTCTTAAC 45066 Query 46582 AAAGATTTGCATT 46594 || || |||||| Sbjct 45067 GAAAATCTGCATT 45079 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| || ||||||| ||| |||||| |||||||||||||| || Sbjct 45817 CCTCCGCGGAGACGCAGGACGAGATGCAGCGTAGACTCCTTCTGGATATTGTAGTCCGAC 45876 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || || |||| |||||||| ||||| || || |||| ||| || ||||||| Sbjct 45877 AGCGTCCGTCCGTCCTCGAGCTGTTTGCCCGCAAAGATCAGGCGTTGTTGGTCGG 45931 >seq85 Length=318930 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 || ||| || ||||| | || |||||| |||| ||||||||||| || ||||| Sbjct 169704 ACACAAGACGAGATGGAGGGTCGACTCCTTCTGGACGTTGTAGTCGGAGAGGGTGCGGCG 169645 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||| ||||| || | |||||| |||||| ||| | || ||||| Sbjct 169644 GTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGTTGGTCGAGCGGGATGCCCTCCTG 169585 Query 46498 GTCCATGATCTTCTTCTTGA 46517 |||| ||||||| ||||| Sbjct 169584 GTCCTGGATCTTCGCCTTGA 169565 >seq41 Length=470795 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || |||||| ||||| ||||||||||| || ||||| | Sbjct 242665 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 242724 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || |||||||||||||||||||| |||| ||||||||||||| Sbjct 242725 ATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGG 242768 >seq65 Length=369186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/109 (77%), Gaps = 7/109 (6%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||| ||||||||||| || ||||| ||| |||||||||||||| ||||| Sbjct 292369 CTCCTTCTGGACGTTGTAGTCGGAGAGGGTGCGGCGGTCCTCGAGCTGCTTGCCCGCGAA 292310 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 || | |||||| | |||| | || |||||||||| ||||||| Sbjct 292309 GATGAGGCGCTG-TTGTCG------ATGCCCTCCTTGTCCTGGATCTTC 292268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224876671280