Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq161 116 5e-21 >seq161 Length=195812 Score = 116 bits (128), Expect = 5e-21 Identities = 307/466 (66%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 47861 CATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTT 47920 |||| ||||| ||||| | ||||| | ||||| ||||| || || | ||||| || Sbjct 122781 CATGACCCCAATCACGCTGAGCATCGATGTTTCCGAGATACAAGCACTGCTGCTTGCCCA 122840 Query 47921 CAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTG 47980 ||||| || ||||| || ||||| | || || || || || || || | Sbjct 122841 GTGAGATCTCTGCGGCCGCTCTCGTGATCTTCCTGGTCACGAATGTCCTGCCTCGCCTGG 122900 Query 47981 GAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGT 48040 || || ||||| || || |||||| | ||||| ||||||||||||| || | |||| Sbjct 122901 GACTCTCGTGATTGAACAGGATACCATTGCAGGCGTACATTCCGTATGCCTCCCTGTAGT 122960 Query 48041 TCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAG 48100 | ||||||||| | ||||| || || || || || || || || ||||| | Sbjct 122961 TAACAGTGATCCAGTACGCGTAGAGCTTGGCGCAGCCGTAGGGGGAGCGAGGGTAGAAGG 123020 Query 48101 GTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTT 48160 | || ||||| |||| ||||| || || || || || || ||| ||||| |||| Sbjct 123021 GAGTCGTCTCGCTCTGAGGAGTTTCGACGACTTTGCCGTAGAGCTCAGACGTGGACGCTT 123080 Query 48161 GATAGATACGAACCCTATCTTCCATCTCAA----GCA--AACGGACTGCCTCAAGCACTC 48214 | |||| ||| || | || ||| | ||| ||||| || ||||| | | Sbjct 123081 GGTAGAAACGGAC---GTGTT---TCTGGAGGCCGCATGTACGGATCGCGTCAAGAAGAC 123134 Query 48215 TCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTA 48274 || ||||| | | |||| | || |||||||| | |||||| || || || || | Sbjct 123135 GGAGAGTGCCCAGGCCATCGACATCGCCTGTATACTCAGCCATCTCGAAGGAGACTTTGA 123194 Query 48275 CATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTG 48320 | || || || || || || |||||||| |||||||| || Sbjct 123195 CGTGCGATTGGGCGCCCAGGTTGTAAATCTCGCTGGGTTGAACTTG 123240 Score = 113 bits (124), Expect = 6e-20 Identities = 305/464 (66%), Gaps = 12/464 (3%) Strand=Plus/Plus Query 47863 TGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCA 47922 || ||||| ||||| | ||||| | ||||| ||||| || || | ||||| || Sbjct 139636 TGGCCCCAATCACGCTGAGCATCGATGTTTCCGAGATACAAGCACTGCTGCTTGCCCAGT 139695 Query 47923 GAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGA 47982 ||||| || ||||| || ||||| | || || || || || || || ||| Sbjct 139696 GAGATCTCTGCGGCCGCTCTCGTGATCTTCCTGGTCACGAATGTCCTGCCTCGCCTGGGA 139755 Query 47983 GATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTC 48042 || ||||| || || |||||| | ||||| ||||||||||||| || | ||||| Sbjct 139756 CTCTCGTGATTGAACAGGATACCATTGCAGGCGTACATTCCGTATGCCTCCCTGTAGTTA 139815 Query 48043 TTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGT 48102 ||||||||| | ||||| || || || || || || || || ||||| || Sbjct 139816 ACAGTGATCCAGTACGCGTAGAGCTTGGCGCAGCCGTAGGGGGAGCGAGGGTAGAAGGGA 139875 Query 48103 GTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGA 48162 || ||||| |||| ||||| || || || || || || ||| ||||| ||||| Sbjct 139876 GTCGTCTCGCTCTGAGGAGTTTCGACGACTTTGCCGTAGAGCTCAGACGTGGACGCTTGG 139935 Query 48163 TAGATACGAACCCTATCTTCCATCTCAA----GCA--AACGGACTGCCTCAAGCACTCTC 48216 |||| ||| || | || ||| | ||| ||||| || ||||| | | Sbjct 139936 TAGAAACGGAC---GTGTT---TCTGGAGGCCGCATGTACGGATCGCGTCAAGAAGACGG 139989 Query 48217 AGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACA 48276 || ||||| | | |||| | || |||||||| | |||||| || || || || || Sbjct 139990 AGAGTGCCCAGGCCATCGACATCGCCTGTATACTCAGCCATCTCGAAGGAGACTTTGACG 140049 Query 48277 TGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTG 48320 || || || || || || |||||||| |||||||| || Sbjct 140050 TGCGATTGGGCGCCCAGGTTGTAAATCTCGCTGGGTTGAACTTG 140093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665478478046480