Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq174 113 4e-20 seq114 91.5 1e-13 >seq174 Length=181799 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || ||||| || || | || Sbjct 45306 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCC 45247 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| ||| Sbjct 45246 GACACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAA 45187 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| |||||||| |||||| | | | || ||||| ||| Sbjct 45186 CAGCGTCTTATCTTTGCCGGCAAACAGCTCGAGGATGGTCGCACGCTCTCGGATTACAAC 45127 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || | || |||| | || ||||| Sbjct 45126 ATCCAGAAAGAGTCCACTCTGCATCTCGTCCTGCGTCTCCGTGGAGG 45080 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || ||||| || || || || || || || || || | | Sbjct 45078 ATGCAGATTTTCGTTAAGACCCTAACGGGAAAGACCATCACCCTTGAGGTCGAGTCGTCG 45019 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || |||||||| || Sbjct 45018 GACACGATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 44959 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || ||||| ||||| |||||| | | | | || ||||| ||| Sbjct 44958 CAGCGTCTTATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGGACCCTCTCGGATTACAAC 44899 Query 24884 ATTCAAAAGGAATCGACACTACACTTGG 24911 || ||||||||||| || || ||||||| Sbjct 44898 ATCCAAAAGGAATCCACTCTTCACTTGG 44871 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 45815 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCTTCG 45756 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||||||| Sbjct 45755 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAA 45696 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| |||||| | | | || || || ||| Sbjct 45695 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 45636 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGG--TGTTGCGATTGC 24923 || || ||||| ||||| || || ||||| ||| ||||||| Sbjct 45635 ATCCAGAAGGAGTCGACGCTGCATCTTGGTATGTCTCGATTGC 45593 >seq114 Length=262464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 228933 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCGTCG 228874 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || ||||| ||| Sbjct 228873 GACACTATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAA 228814 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||||||||| | | | | || || || ||| Sbjct 228813 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGACTACAAC 228754 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 228753 ATCCAGAAGGAGTCTACTCTCCA 228731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886836199920