Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq114 102 7e-17 seq174 96.9 3e-15 >seq114 Length=262464 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133 |||||| || ||||||||||| || || || || || ||| || || || |||| | Sbjct 228495 CACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCT 228554 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 | ||||| ||||| || || || || ||||||||||||| ||| | || ||| |||||| Sbjct 228555 CGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCT 228614 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| |||| | | | || || |||||| || || | |||||| | | Sbjct 228615 GGATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGCGTGATGGTCT 228674 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||||||||| Sbjct 228675 TGCCGGTGAGGGTCTTGACGAAGATTTGCAT 228705 >seq174 Length=181799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || ||||| | || || || | || || ||||| Sbjct 45103 ATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCGAGCTG 45162 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| ||||||||||| ||||||| || | || ||| |||||| || || Sbjct 45163 TTTGCCGGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 45222 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | || | ||| | | | || ||| ||||| || || | ||||| | || || | Sbjct 45223 CGCCTTCA-CGTTGTCGATGGTGTCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCAG 45281 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || |||||||| ||||| Sbjct 45282 TAAGCGTCTTGACAAAGATCTGCAT 45306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 |||| || || ||| || ||||| || || ||||| | || || || | || || | Sbjct 44871 CCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTCCGGCCATCCTCGA 44930 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| || || || || ||||||||||||||||||| || | | ||| || ||| || Sbjct 44931 GCTGCTTCCCTGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGA 44990 Query 39197 TTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | ||| |||| ||| | | | ||| || |||||| || || | ||||| | ||| Sbjct 44991 TCTTCGCCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTT 45049 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| || || ||||| Sbjct 45050 CCCGTTAGGGTCTTAACGAAAATCTGCAT 45078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||| || |||| ||| || ||| | || || ||||| Sbjct 45332 TGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGCGTGCGTCCATCCTCGAGCTGC 45391 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||| ||||| | || | || ||| || ||| ||| | | Sbjct 45392 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTATCC-TGAATCTT 45450 Query 39202 TGT-TTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || |||| ||| | | | || ||| || || || || | || || | || |||| Sbjct 45451 TGCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCAACCTCGAGGGTAATGGTCTTGCCCG 45509 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || ||||||||||| Sbjct 45510 TCAGGGTCTTGACGAAGATTTGCAT 45534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535580043482