Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fibularhizoctonia_20sp._20CBS_20109695_20[genbank_20GCA_5F001630335. 1_202016-04-25] 1,914 sequences; 95,118,143 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq114 154 1e-32 seq174 147 2e-30 seq41 120 3e-22 seq85 114 1e-20 seq65 102 8e-17 seq12 102 8e-17 >seq114 Length=262464 Score = 154 bits (170), Expect = 1e-32 Identities = 164/213 (77%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || ||||||||||||||||||||||| |||||| || |||||| |||| | Sbjct 228495 CACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGCCCGTCCT 228554 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||||||||| || |||||||| ||||| | ||| | || |||||||||| Sbjct 228555 CGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCT 228614 Query 41772 TGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| || ||| || | || | ||||| |||||| ||||| | ||| || || Sbjct 228615 GGATCTTCGCCTTGACATTGTCG--ATGGTGTCAGACGACTCGACCTCGAGCGTGATGGT 228672 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || ||||| Sbjct 228673 CTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 228705 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 228707 CCTCCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 228766 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| || |||||||||||||| | ||| Sbjct 228767 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGG 228826 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || || | ||| | | | |||||| |||||| || Sbjct 228827 ATGCCCTCCTTATCC-TGGATCTTGGCCTTGACGTTGTCGATAGTGTCCGACGACTCGAC 228885 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||| || || || || || || ||||| || || ||||||||| Sbjct 228886 CTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 228934 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| ||||||||| ||||| |||||||| Sbjct 228934 GCCTCCACGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 228993 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 228994 CAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 229053 Query 41755 AACGCT 41760 | ||| Sbjct 229054 GATGCT 229059 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||| ||| ||||||||| ||||| || ||||| Sbjct 229216 GCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 229275 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || |||||||||||||||||||| || || ||||| ||||| | ||| Sbjct 229276 CAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCGGGGGG 229335 Query 41755 AACGCT 41760 | ||| Sbjct 229336 GATGCT 229341 >seq174 Length=181799 Score = 147 bits (162), Expect = 2e-30 Identities = 166/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||| || || ||||||||||| ||||||||| ||||| |||||||| || ||||| Sbjct 45600 AGACATACCA--AGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 45657 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| || ||||||||||| || | |||| || |||| Sbjct 45658 CCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCGGGAGGAATGCCCTCC 45717 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | | ||||| ||||| ||||| | || Sbjct 45718 TTGTCC-TGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGT 45776 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || ||||| ||||| |||||||| Sbjct 45777 GATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 45815 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || |||||||| ||| ||| ||||| ||||| || || ||| Sbjct 45080 CCTCCACGGAGACGCAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGAG 45139 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||| |||||||| || || || ||||||||||| | || Sbjct 45140 AGCGTGCGACCATCCTCGAGCTGTTTGCCGGCAAAGATAAGACGCTGTTGGTCGGGAGGG 45199 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | |||||| ||||| || Sbjct 45200 ATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATGGTGTCGGATGACTCGAC 45258 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || |||||||| || || |||||||| Sbjct 45259 CTCGAGAGTGATGGTCTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 45306 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| || || |||||||| Sbjct 45308 CCACCACGCAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAA 45367 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || || ||||||||||| | || Sbjct 45368 AGCGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGG 45427 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | ||||| | ||| | | | |||||| || || || Sbjct 45428 ATGCCCTCCTTATCC-TGAATCTTTGCCTTGACGTTGTCGATGGTGTCGGAGGATTCAAC 45486 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || |||||||| ||||| ||||| || ||||| Sbjct 45487 CTCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 45534 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || ||||| || || |||||||| || | || ||||||||||| || ||||| Sbjct 44888 TCCTTTTGGATGTTGTAATCCGAGAGGGTCCGGCCATCCTCGAGCTGCTTCCCTGCGAAG 44947 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| ||||| | || | | |||||| ||| || | || || | ||| Sbjct 44948 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC-TGGATCTTCGCCTTGACGTT 45006 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| |||||| ||||| | || || || || ||||| || ||||| || Sbjct 45007 GTCAATCGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTTCCCGTTAGGGTCTTAAC 45066 Query 41851 GAAAATCTGCAT 41862 |||||||||||| Sbjct 45067 GAAAATCTGCAT 45078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||||||||| ||||||||| || || ||||| || Sbjct 45817 CCTCCGCGGAGACGCAGGACGAGATGCAGCGTAGACTCCTTCTGGATATTGTAGTCCGAC 45876 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || |||| |||||||| ||||| || || |||||||| |||||||| Sbjct 45877 AGCGTCCGTCCGTCCTCGAGCTGTTTGCCCGCAAAGATCAGGCGTTGTTGGTC 45929 >seq41 Length=470795 Score = 120 bits (132), Expect = 3e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 242654 CCACCACGCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 242713 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 242714 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 242773 Query 41756 A 41756 | Sbjct 242774 A 242774 >seq85 Length=318930 Score = 114 bits (126), Expect = 1e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||| | || |||| || || ||||| || || ||||||||| | ||| |||||||| Sbjct 169716 GCCGTCACGGAGACACAAGACGAGATGGAGGGTCGACTCCTTCTGGACGTTGTAGTCGGA 169657 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||||||||| ||| |||||||||||||| ||||| || |||||||||||||| |||| Sbjct 169656 GAGGGTGCGGCGGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGTTGGTCGAGCGG 169597 Query 41754 GAACGCTCTCCTTGTCCATGATTTT 41778 | | || ||||| |||| ||| || Sbjct 169596 G-ATGCCCTCCTGGTCCTGGATCTT 169573 >seq65 Length=369186 Score = 102 bits (112), Expect = 8e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || ||||| || | ||||||||| | ||| |||||||| Sbjct 292405 GCCGCCACGGAGACGCAGGACGAGATGGAGGATCGACTCCTTCTGGACGTTGTAGTCGGA 292346 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||||||||| ||| |||||||||||||| ||||| || ||||||||||| Sbjct 292345 GAGGGTGCGGCGGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGTTG 292295 >seq12 Length=673443 Score = 102 bits (112), Expect = 8e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||| | | || ||||| || ||| ||||||||| ||||| ||| | || Sbjct 358905 GCCGCCACGGAGATGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGCCCGA 358846 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGG 41753 ||| |||| ||| || ||||||||||| ||||| || || ||||||| |||| | | || Sbjct 358845 GAGCGTGCACTCATCCTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTATTGGGCGGACGA 358786 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAA-CGACGACACAGTGTCGCTCGACTCC 41812 || | | | |||| || ||| || ||| || | || | ||||| ||||| Sbjct 358785 GATCTC-CGCCTTACCCTGGATCTTCGCCTTGAATTGTCG--ATGGTGTCCGAAGACTCG 358729 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||| | | | ||||| || || || | ||||| ||||| ||||||||| Sbjct 358728 ATCTCGAGCATGATCGTCTTGCCGGTGA-TGTCTTGACGAAGATCTGCATG 358679 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||| | | || ||||| || ||| ||||||||| ||||| ||| | || Sbjct 355467 GCCGCCATGGAGATGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGCCCGA 355408 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGG 41753 ||| |||| ||| || ||||||||||| ||||| || || ||||||| |||| | | || Sbjct 355407 GAGCGTGCACTCATCCTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTATTGGGCGGACGA 355348 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAA-CGACGACACAGTGTCGCTCGACTCC 41812 || | | | |||| || ||| || ||| || | || | ||||| ||||| Sbjct 355347 GATCTC-CGCCTTACCCTGGATCTTCGCCTTGAATTGTCG--ATGGTGTCCGAAGACTCG 355291 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||| | | | ||||| || || || | ||||| ||||| ||||||||| Sbjct 355290 ATCTCGAGCATGATCGTCTTGCCGGTGA-TGTCTTGACGAAGATCTGCATG 355241 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| || ||||| | ||| ||||||||| ||||| |||| || Sbjct 355702 GCCGCCACGGAGACGCGGGACGAGATGGAAGGTGGACTCCTTCTGGATGTTGCAGTCCGA 355643 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| |||| | | | ||||||||||| ||||| || || |||||||||||||| Sbjct 355642 GAGCGTGCACCCATTCTCGAGCTGCTTCCCGGCAAAGATGAGGCGCTGTTGGTC 355589 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| || ||||| | ||| ||||||||| ||||| |||| || Sbjct 359140 GCCGCCACGGAGACGCGGGACGAGATGGAAGGTGGACTCCTTCTGGATGTTGCAGTCCGA 359081 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| |||| | | | ||||||||||| ||||| || || |||||||||||||| Sbjct 359080 GAGCGTGCACCCATTCTCGAGCTGCTTCCCGGCAAAGATGAGGCGCTGTTGGTC 359027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292939376800