Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq57 123 3e-23 seq199 118 1e-21 >seq1 Length=2270075 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| |||||| || |||||| || ||||||||||| | Sbjct 785641 CCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAG 785700 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 785701 AGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 785760 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| | ||| | |||| |||| | | | |||||| || || || Sbjct 785761 ATGCCCTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGAC 785819 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| ||||| || || || || ||||| |||||||| ||||| Sbjct 785820 CTCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 >seq57 Length=802683 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 ||||||||| || || || |||||||| | || ||||| |||| ||||||||||| || Sbjct 362554 TGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCC 362495 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 |||||| || || |||||||| || | || | | |||||||||| ||| ||| || Sbjct 362494 AGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTT 362435 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | | | | ||||| || ||||| |||| ||||||||| ||||| || || || Sbjct 362434 CACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGT 362375 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 362374 CTTGACGAAGATCTGCAT 362357 Score = 105 bits (116), Expect = 8e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||||||||||| || || ||||| || | || || ||| |||| |||||||| Sbjct 363118 ATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTTCTAGCTG 363059 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 |||||||||||| || | ||||| ||||| | || | || ||||||||| || | | Sbjct 363058 CTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-TGGATCT 363000 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | | | ||| | | | |||||| || || || || | || || || || || | Sbjct 362999 TCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTG 362940 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || ||||||||||| Sbjct 362939 TCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 102 bits (112), Expect = 9e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | || |||||||| ||||| || || || | ||||| || | Sbjct 363408 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACC 363349 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || | ||||||||||| | ||| | || ||||| Sbjct 363348 GTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 363289 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | |||| | | | ||||| ||| || || |||| |||| Sbjct 363288 ATCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGA 363230 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || |||||||| | ||||| || || || |||||| Sbjct 363229 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 363192 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 42984 AATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA 43043 || ||||||||||| || || || || || | || || || |||| || || ||||| Sbjct 362833 AAGGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTG 362774 Query 43044 CCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG- 43102 ||||| || || || || |||||||| | ||| | | |||||||| | ||| | || | Sbjct 362773 CCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTCGC 362715 Query 43103 TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 |||| ||| | | | || || ||||| || || | || ||||| |||||||| | Sbjct 362714 CTTGA-CGTTGTCGATGGTATCAGATGATTCGACCTCAAGGGTAATGGTCTTGCCCGTGA 362656 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || || ||||| Sbjct 362655 GCGTCTTGACGAAAATCTGCAT 362634 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| |||| ||||| ||| | || || |||||||| || Sbjct 362269 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 362210 Query 43047 GCGAATATGAGTCGCTGCTGGTCGG 43071 ||||| ||||| || |||||||||| Sbjct 362209 GCGAAGATGAGGCGTTGCTGGTCGG 362185 >seq199 Length=104010 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 ||||||||| || || || |||||||| | || ||||| |||| ||||||||||| || Sbjct 100046 TGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGCTGCTTGCC 99987 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 |||||| || || |||||||| || | || | | |||||||||| ||| || || Sbjct 99986 AGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 99927 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | | | | ||||| || ||||| |||| ||||||||| ||||| || || || Sbjct 99926 CACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCAGTAAGGGT 99867 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 99866 CTTGACGAAGATCTGCAT 99849 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||||| ||||||||||| ||||| ||||| |||| || || ||| |||| || Sbjct 100614 ACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTTC 100555 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || | ||||| ||||| | || | || ||||||||| | Sbjct 100554 GAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC-T 100496 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || | | | ||| | | | |||||| || || || || | || || || | Sbjct 100495 GGATCTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||| || ||||||||||| Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 102 bits (112), Expect = 9e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | || |||||||| ||||| || || || | || || || | Sbjct 100898 ACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGCGTACGACC 100839 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 100838 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 100779 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || |||| ||| | | | ||||| ||| || || |||| |||| Sbjct 100778 GTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACTTCGAGAGTGA 100720 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || |||||||| | ||||| || || || |||||| Sbjct 100719 TCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCATT 100682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || || || || | || || || |||| || || ||||| ||| Sbjct 100322 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTCGAGTTGCTTGCCA 100263 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 || || || || || |||||||| | ||| | | |||||||| | ||| | || | || Sbjct 100262 GCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGT-CTTGAATCTTCGCCTT 100204 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 || ||| | | | || || ||||| || || | || ||||| |||||||| |||| Sbjct 100203 GA-CGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTTGCCCGTGAGCG 100145 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || || || ||||| Sbjct 100144 TCTTGACGAAAATCTGCAT 100126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| |||| ||||| ||| | || || |||||||| || Sbjct 99761 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTGCCG 99702 Query 43047 GCGAATATGAGTCGCTGCTGGTCGG 43071 ||||| ||||| || |||||||||| Sbjct 99701 GCGAAGATGAGGCGTTGCTGGTCGG 99677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815984615280