Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq199 129 4e-25 seq57 123 2e-23 >seq1 Length=2270075 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || || || || ||||| || ||||| || || Sbjct 785641 CCTCCGCGAAGACGAAGCACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAG 785700 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| ||||||||||| || Sbjct 785701 AGGGTACGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 785760 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | || | | |||| || | || ||||| Sbjct 785761 ATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACC 785820 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| ||||| || ||||||||||| ||||||||||||||||| Sbjct 785821 TCCAACGTAATGGTCTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 785867 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||||| ||| || ||||| |||||||| |||||| Sbjct 786378 CCGCCACGCAGGCGAAGTACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGAC 786437 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| || || || | |||||||| ||| ||| Sbjct 786438 AGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGATCGGGGGGA 786497 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | |||| |||| ||| ||||| Sbjct 786498 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCAATCGTGTCGGACGACTCGACC 786557 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||| || ||||| ||||| || || ||||||||||||||| Sbjct 786558 TCGAGCGTGATTGTCTTGCCCGTGAGTGTCTTGACAAAGATCTGCATC 786605 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| |||||| |||| |||| ||||||||||||||||| ||| Sbjct 786186 TCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCAAAA 786245 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || || | || |||||| || ||||| ||| | || | Sbjct 786246 ATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTTAACATTG 786305 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||||| |||| ||||| || || || |||||||| || ||| Sbjct 786306 TCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTCTTTCCCGTGAGAGTCTTGACA 786365 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 786366 AAGATCTGCAT 786376 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||||| || || || || | || || ||||| ||||||||||||||| Sbjct 785869 CCACCGCGCAGCCGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 785928 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || | |||||| || ||||| || || || ||||| || || Sbjct 785929 AACGTCCGGCCATCTTCGAGCTGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGA 785988 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 785989 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACT 786048 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| ||||| || || || ||||||||||| Sbjct 786049 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 786095 >seq199 Length=104010 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | |||||| ||||| | |||||| || ||||| ||||| ||||| Sbjct 100913 GAAGCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTC 100854 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || ||| ||| | || |||| ||||||||| ||||| || || ||||||||||| Sbjct 100853 CGAGAGCGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 100794 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || |||||||| ||||| ||| | | | | || | || | ||| || Sbjct 100793 CGGAATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTC 100734 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | ||||| || ||||| || | ||| ||||| || |||||||| Sbjct 100733 GACTTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 100683 Score = 105 bits (116), Expect = 4e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || |||||||| |||||||| ||||| ||| || |||| || | | Sbjct 100054 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 99995 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| ||||| || || |||||||| || || | | ||||||||| ||| Sbjct 99994 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 99935 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | || | || | || || || || | ||||||||| ||||| Sbjct 99934 TTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTCTTGCCA 99875 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||| Sbjct 99874 GTAAGGGTCTTGACGAAGATCTGCAT 99849 >seq57 Length=802683 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | |||||| ||||| | |||||| || ||||| ||||| ||||| Sbjct 363423 GAAGCCACCGCGGAGACGCAGCACGAGGTGGAGAGTACTCTCCTTCTGAATGTTATAGTC 363364 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || || ||| |||| |||| ||||||||| ||||| || | ||||||||||| Sbjct 363363 CGAGAGAGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGG 363304 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || ||||| || ||||| ||| | || | | || | || | ||| || Sbjct 363303 CGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTC 363244 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || | ||||| || ||||| || | ||| ||||| || |||||||| Sbjct 363243 GACCTCGAGAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAAATCTGCAT 363193 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || |||||||| |||||||| ||||| ||| || |||| || | | Sbjct 362562 AGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCCTCTAGC 362503 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| ||||| || || |||||||| || || | | ||||||||| ||| Sbjct 362502 TGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGGATC 362443 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 ||| ||| | || | | || | || | || || || || | ||||||||| ||||| Sbjct 362442 TTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTCTTGCCA 362383 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||| Sbjct 362382 GTAAGGGTCTTGACGAAGATCTGCAT 362357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071110138560