Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq199 134 1e-26 seq57 134 1e-26 seq1 104 2e-17 seq146 84.2 2e-11 >seq199 Length=104010 Score = 134 bits (148), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| |||||||||||||||||||||||||||||||| || || |||| | Sbjct 100615 TACCAAGATGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCGCCCGTCTT 100556 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || ||||| ||||| ||||||||||| ||||| | || ||||||||| Sbjct 100555 CGAGCTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCT 100496 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || |||||| | | |||| | ||| ||||| | |||||| |||| Sbjct 100495 GGATCTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 100436 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||| ||||| || ||||||||||| Sbjct 100435 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 100405 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || ||||||||||||||||| ||||| |||||| || ||| |||| || Sbjct 100335 ACCAAGGTGAAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCGTCCTC 100276 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| || || || || |||| || || ||||| || || | |||||||||||| Sbjct 100275 GAGTTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCAGGCGGGATACCCTCCTTGTCTTG 100216 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | || || ||||||| |||||| ||||| Sbjct 100215 AATCTTCGCCTTGACGTTGTCGATGGTATCAGAGGATTCGACCTCCAGGGTAATGGTCTT 100156 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||| || ||||| || || || |||||| Sbjct 100155 GCCCGTGAGCGTCTTGACGAAAATCTGCATG 100125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| || || |||||||| ||||| |||||||| ||| || || |||| Sbjct 100060 ATACCAAGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCC 100001 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| || | ||||| || || || || | ||||||||||||| Sbjct 100000 TCTAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCC 99941 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | ||||| |||||| || | || || ||| Sbjct 99940 TGGATCTTGGCCTTCACATTGTCGATGGTGTCCGATGACTCCACTTCGAGCGTGATGGTC 99881 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || ||||| || ||||| |||||| Sbjct 99880 TTGCCAGTAAGGGTCTTGACGAAGATCTGCATG 99848 >seq57 Length=802683 Score = 134 bits (148), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 |||| || |||||||||||||||||||| |||||||||||| || || |||| | Sbjct 363125 TACCGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGCCCGTCTT 363066 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || ||||| ||||| ||||||||||| ||||| | || ||||||||| Sbjct 363065 CTAGCTGCTTACCAGCGAAGATCAAACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCT 363006 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || |||||| | | |||| | ||| ||||| | |||||| |||| Sbjct 363005 GGATCTTCGCCTTAACGTTGTCGATTGTGTCGGAAGACTCGACCTCAAGGGTAATAGTCT 362946 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||||||||| || ||||||||||| Sbjct 362945 TTCCTGTCAGAGTCTTGACGAAGATTTGCAT 362915 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || || ||||||||||||||||| ||||| || ||| |||| ||||| || Sbjct 363396 GTGGAGAGTACTCTCCTTCTGAATGTTATAGTCCGAGAGAGTACGACCGTCTTCCAGCTG 363337 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||| ||||| ||||| || || | || ||||| ||| ||| || Sbjct 363336 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCTTCCTTATCCTGAATCTT 363277 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| ||||| | || |||||||||||||| Sbjct 363276 CGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGAGTGATCGTCTTGCCCGT 363217 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||| || || ||||| Sbjct 363216 CAAAGTCTTCACGAAAATCTGCAT 363193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || || |||||||| ||||| |||||||| ||| || || |||| Sbjct 362568 ATACCGAGGTGAAGTGTGCTCTCTTTCTGGATGTTGTAATCGGAGAGCGTCCGTCCGTCC 362509 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| || | ||||| || || || || | ||||||||||||| Sbjct 362508 TCTAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCC 362449 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | ||||| | |||||| || | || || ||| Sbjct 362448 TGGATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACTTCGAGCGTGATGGTC 362389 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || ||||| || ||||| |||||| Sbjct 362388 TTGCCAGTAAGGGTCTTGACGAAGATCTGCATG 362356 >seq1 Length=2270075 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || |||||| ||||||||| ||||||||||| ||| || |||| Sbjct 786165 ATACCGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCT 786224 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || ||||| | |||||||| ||| Sbjct 786225 TCCAACTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTATCC 786284 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || |||||| | | |||| | ||| ||||||| || || ||| Sbjct 786285 TGAATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTCTCGACCTCCAGAGTGATAGTC 786344 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| |||||||| ||||| Sbjct 786345 TTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 786376 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| ||| ||||||||| || ||||| || || ||| |||| || Sbjct 785659 ACCAGATGCAACGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCGTCCTCA 785718 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| ||||| | ||||||||||| | Sbjct 785719 AGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGA 785778 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| ||| ||||||| ||||| ||||| Sbjct 785779 ATCTTTGCCTTGACATTGTCGATCGTGTCCGATGACTCGACCTCCAACGTAATGGTCTTC 785838 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||||||||||||||| |||||| Sbjct 785839 CCGGTGAGAGTCTTCACAAAGATCTGCATG 785868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GT-TGGCGATCGTCGTCCAGT 45190 || ||||| ||||||||| |||||||||||| || || ||| ||| ||| || Sbjct 785893 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTCCGGCCATCTTCG---AGC 785949 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 || || || ||||| || | || || || || ||||| | ||||||||||||| ||| Sbjct 785950 TGCTTCCCAGCGAAGATAAGGCGTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATC 786009 Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 || ||| || | | |||| | ||| || || | || |||||||||||| Sbjct 786010 TTCGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCGAGCGTGATCGTCTTGCCC 786069 Query 45311 GTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| || ||||| ||||| Sbjct 786070 GTGAGGGTCTTAACGAAGATCTGCAT 786095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || || ||||||||| |||||||| || || | | |||| | Sbjct 785429 TACCAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCTACCGTCCT 785488 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || || || || || | || || || || ||||| | |||||||||||| Sbjct 785489 CCAGCTGCTTCCCCGCAAAGATGAGACGTTGCTGATCCGGAGGGATACCCTCCTTGTCTT 785548 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | | |||| | ||| ||||| | ||| ||||||| Sbjct 785549 GAATCTTCGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCT 785608 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||| || || || ||||| |||||| Sbjct 785609 TGCCAGTCAATGTTTTGACGAAGATCTGCATG 785640 >seq146 Length=609471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||||||||||||| | || ||| |||| ||| Sbjct 163670 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTGCGTCCGTCCTCC 163729 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || || ||||| |||| ||||| ||||| || || Sbjct 163730 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCCGGGGG 163770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074111814746