Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20palustris_20[genbank_20GCA_5F001937815.1_202017-01-06] 226 sequences; 43,856,698 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq150 178 2e-39 >seq150 Length=1432513 Score = 178 bits (196), Expect = 2e-39 Identities = 300/432 (69%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || |||||| |||||| ||||| |||||||| | | || | ||||| || ||||| Sbjct 453176 CAGACATGCAAAATCGGTGTGCATTCCCTCGTCGCGGATTATCAGCTCGTTGGAGAACGT 453235 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| || || ||||| |||||||||||||||| ||| ||||| ||||| || Sbjct 453236 CAGCCCGGGCATGAGCCCGCGCTTCTTAAGCCAAAATATGGCAGCAAATGAGCCGGAGAA 453295 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC-TGTC 33754 |||||| || || ||||| || ||||| | |||| ||| || ||| | ||| |||| Sbjct 453296 GAAGATACCCTCGACTGCGGCGAAGGCCACTAGTCGCTCAGCAAAACTTGACCGCTTGTC 453355 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||| |||||||||| |||||||| || | || || || || || ||||| Sbjct 453356 CGATATCCAGCGGAGAGCCCAATCCGCCTTCTTCTTGATGCACGGTATTGTCTCGATGGC 453415 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | ||| || || | || | || || | || || ||||| | || ||| Sbjct 453416 GTCAAATAGGCGGTCTCGCTCTTGCGGGTCCTTGATGTACGTGTCGATGAGCAGCGAATA 453475 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | || ||||||||||| || || || || || || |||||||||| ||||| | Sbjct 453476 TGTCTCGGAATGAATGTTCTCCATCATTATTTGGAAGCCATAGAAACATCGTGCCTCCGC 453535 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | |||||||| | | || || || | | || || |||||||| ||||| ||| Sbjct 453536 AGCTTGCACTTCATTCGAGAAGCGCTCGACAAGGTTCTCGTTCACTATGCCATCGGAGGC 453595 Query 33995 TGCAAAAAACGC 34006 || || || || Sbjct 453596 GGCGAAGAATGC 453607 Score = 152 bits (168), Expect = 6e-32 Identities = 371/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||| ||||| ||||| || | || || | ||||| || |||||||| Sbjct 455568 CAAGCAAAATCGGTGTGCATGCCCTCATCACGGCTGATGAGCTCGTTCGAGAACGTGAGG 455509 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| |||||||| || || ||||| || |||||| Sbjct 455508 CCGGGCATGAGACCACGCTTCTTGAGCCAGAATATGGACGCAAAGGATCCAGAGAAGAAG 455449 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGCT-GTCATGT 33758 || || || |||||||| ||||| | |||| ||| || | | | |||| |||| Sbjct 455448 ATACCCTCGACTGCAGCGAAGGCCACCAGTCGCTCAGCAAAGCTCGACCGCTTGTCAGCG 455389 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||||||| || |||||||| || | || || || || || ||||||| Sbjct 455388 ATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGCATCG 455329 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || | | | ||| || || | || || ||||| | || ||| | Sbjct 455328 AATAGGTGCTCGCGCTGCTTAGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAGTACGTC 455269 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || ||||||||||| | ||||| | | Sbjct 455268 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAACAGCGCGCCTCAGCCGCC 455209 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | | || || || | | || || || || || || || || || Sbjct 455208 TGTACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAAGCGGCG 455149 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 34054 || || || | ||||| || || | | |||| || ||| | || ||||| Sbjct 455148 AAGAAAGCAAGGACATGGGAGATGAAGTGTCGCTCGT-TGTCGTTCATGCGGTTGTTCCA 455090 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || || || || | || | || || || ||||| ||||| ||||| ||||| Sbjct 455089 GTCGTGGAGGTCCTTGGAGAGGTCGATCTCCTCGACCGTCCAGAATGAGGCCTCGGCCTT 455030 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 455029 CTTGTACATCTGCCAGAT 455012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815820765280